赫克肖尔内分枝杆菌JCM 15655的全基因组序列，该菌与致病性非结核分枝杆菌物种蟾蜍分枝杆菌密切相关。
Complete Genome Sequence of Mycobacterium heckeshornense JCM 15655, Closely Related to a Pathogenic Nontuberculous Mycobacterial Species, Mycobacterium xenopi.
作者信息
Yoshida Mitsunori, Fukano Hanako, Asakura Takanori, Suzuki Masato, Hoshino Yoshihiko
机构信息
Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Antimicrobial Resistance Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
出版信息
Microbiol Resour Announc. 2021 Mar 11;10(10):e00020-21. doi: 10.1128/MRA.00020-21.
Abstract
is a slow-growing mycobacterial species for which pathogenic features are unclear. Here, we report the complete genome sequence of an type strain. This sequence will provide essential information for future taxonomic and comparative genome studies of these mycobacteria.
摘要
是一种生长缓慢的分枝杆菌属物种，其致病特征尚不清楚。在此，我们报告了一株 型菌株的完整基因组序列。该序列将为这些分枝杆菌未来的分类学和比较基因组研究提供重要信息。
相似文献
1
Complete Genome Sequence of Mycobacterium heckeshornense JCM 15655, Closely Related to a Pathogenic Nontuberculous Mycobacterial Species, Mycobacterium xenopi.赫克肖尔内分枝杆菌JCM 15655的全基因组序列，该菌与致病性非结核分枝杆菌物种蟾蜍分枝杆菌密切相关。
Microbiol Resour Announc. 2021 Mar 11;10(10):e00020-21. doi: 10.1128/MRA.00020-21.
2
Complete Genome Sequence of Mycobacterium xenopi JCM15661, Obtained Using Nanopore and Illumina Sequencing Technologies.利用纳米孔和Illumina测序技术获得的偶发分枝杆菌JCM15661全基因组序列
Microbiol Resour Announc. 2020 Mar 5;9(10):e01583-19. doi: 10.1128/MRA.01583-19.
3
Mycobacterium heckeshornense sp. nov., A new pathogenic slowly growing Mycobacterium sp. Causing cavitary lung disease in an immunocompetent patient.赫克霍恩分枝杆菌新种，一种新的致病性缓慢生长分枝杆菌，在免疫功能正常患者中引起空洞性肺病。
J Clin Microbiol. 2000 Nov;38(11):4102-7. doi: 10.1128/JCM.38.11.4102-4107.2000.
4
Complete Genome Sequence of Mycobacterium fortuitum subsp. JCM 6387, a Type Strain of Human-Pathogenic Mycobacteria Showing Inducible Macrolide Resistance.偶然分枝杆菌亚种JCM 6387的全基因组序列，该菌株是一株具有诱导型大环内酯耐药性的人致病性分枝杆菌模式菌株。
Microbiol Resour Announc. 2022 Apr 21;11(4):e0006022. doi: 10.1128/mra.00060-22. Epub 2022 Mar 31.
5
[Microbiologically identified isolates of Mycobacterium heckeshornense in two patients].[两名患者中经微生物学鉴定的赫克霍恩分枝杆菌分离株]
Kekkaku. 2006 Oct;81(10):603-7.
6
Mycobacterium heckeshornense lung infection diagnosed by matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS).通过基质辅助激光解吸电离飞行时间质谱（MALDI-TOF MS）诊断的赫克霍恩分枝杆菌肺部感染。
J Infect Chemother. 2018 Sep;24(9):763-765. doi: 10.1016/j.jiac.2018.01.017. Epub 2018 Mar 1.
7
Mycobacterium heckeshornense lung infection that was diagnosed as Mycobacterium xenopi disease by DNA-DNA hybridization (DDH).通过DNA-DNA杂交（DDH）诊断为偶发分枝杆菌病的赫克霍恩分枝杆菌肺部感染。
Intern Med. 2011;50(11):1251-3. doi: 10.2169/internalmedicine.50.4628. Epub 2011 Jun 1.
8
Complete Genome Sequence of a Type Strain of subsp. , a Member of the Complex.亚种的模式菌株的全基因组序列，属于复合体的一个成员。
Genome Announc. 2018 Feb 1;6(5):e01530-17. doi: 10.1128/genomeA.01530-17.
9
Species-Specific Risk Factors, Treatment Decisions, and Clinical Outcomes for Laboratory Isolates of Less Common Nontuberculous Mycobacteria in Washington State.华盛顿州少见非结核分枝杆菌实验室分离株的物种特异性风险因素、治疗决策及临床结果
Ann Am Thorac Soc. 2017 Jul;14(7):1129-1138. doi: 10.1513/AnnalsATS.201609-731OC.
10
Mycobacterium paragordonae sp. nov., a slowly growing, scotochromogenic species closely related to Mycobacterium gordonae.副戈登分枝杆菌，是一株缓慢生长的、光产色分枝杆菌，与戈登分枝杆菌密切相关。
Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):39-45. doi: 10.1099/ijs.0.051540-0. Epub 2013 Sep 4.
本文引用的文献
1
Complete Genome Sequence of Mycobacterium xenopi JCM15661, Obtained Using Nanopore and Illumina Sequencing Technologies.利用纳米孔和Illumina测序技术获得的偶发分枝杆菌JCM15661全基因组序列
Microbiol Resour Announc. 2020 Mar 5;9(10):e01583-19. doi: 10.1128/MRA.01583-19.
2
Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles.基于 7547 个基因组谱对 175 株非结核分枝杆菌种进行综合亚种鉴定。
Emerg Microbes Infect. 2019;8(1):1043-1053. doi: 10.1080/22221751.2019.1637702.
3
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.DFAST：一个灵活的原核生物基因组注释管道，用于更快地发布基因组。
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
4
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
5
Pulmonary Nontuberculous Mycobacteria-Associated Deaths, Ontario, Canada, 2001-2013.2001 - 2013年加拿大安大略省与非结核分枝杆菌相关的肺部死亡病例
Emerg Infect Dis. 2017 Mar;23(3):468-476. doi: 10.3201/eid2303.161927.
6
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.JSpeciesWS：一个基于成对基因组比较进行原核生物物种界定的网络服务器。
Bioinformatics. 2016 Mar 15;32(6):929-31. doi: 10.1093/bioinformatics/btv681. Epub 2015 Nov 16.
7
Draft Genome Sequence of Mycobacterium heckeshornense Strain RLE.赫克霍恩分枝杆菌菌株RLE的基因组序列草图
Genome Announc. 2015 Aug 27;3(4):e00930-15. doi: 10.1128/genomeA.00930-15.
8
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
9
The geographic diversity of nontuberculous mycobacteria isolated from pulmonary samples: an NTM-NET collaborative study.从肺部样本中分离的非结核分枝杆菌的地理多样性：一项 NTM-NET 合作研究。
Eur Respir J. 2013 Dec;42(6):1604-13. doi: 10.1183/09031936.00149212. Epub 2013 Apr 18.
10
Fast and accurate short read alignment with Burrows-Wheeler transform.使用Burrows-Wheeler变换进行快速准确的短读比对。
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.
Zotero 插件