从本地蜜蜂中分离出的四种[具体物种名未给出]菌株的基因组序列草图
Draft Genome Sequences of Four sp. Strains Isolated from Native Bees.
作者信息
Smith Eric A, Vuong Hoang Q, Miller Delaney L, Parish Audrey J, McFrederick Quinn S, Newton Irene L G
机构信息
Department of Biology, Indiana University, Bloomington, Indiana, USA.
Department of Entomology, University of California, Riverside, California, USA.
出版信息
Microbiol Resour Announc. 2020 Mar 5;9(10):e00022-20. doi: 10.1128/MRA.00022-20.
Abstract
The genus is currently understudied, with only one described species, , isolated from a flower. In an effort to better understand the microbes that come in contact with native bee pollinators, we isolated and sequenced four additional strains of from native bees in the genera and These genomes range in size from 2,104,494 to 2,316,791 bp (mean, 2,246,664 bp) and contain between 1,860 and 2,167 (mean, 2,060) protein-coding genes.
摘要
该属目前研究不足，仅有一种已描述的物种，是从一朵花中分离出来的。为了更好地了解与本地蜜蜂传粉者接触的微生物，我们从 属和 属的本地蜜蜂中分离并测序了另外四株该属菌株。这些基因组大小在2,104,494至2,316,791碱基对之间（平均为2,246,664碱基对），包含1,860至2,167个（平均为2,060个）蛋白质编码基因。
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本文引用的文献
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Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
2
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO：利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
3
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
4
Acetic acid bacteria genomes reveal functional traits for adaptation to life in insect guts.醋酸菌基因组揭示了适应昆虫肠道生活的功能特性。
Genome Biol Evol. 2014 Apr;6(4):912-20. doi: 10.1093/gbe/evu062.
5
The MaSuRCA genome assembler.马苏尔卡基因组组装器。
Bioinformatics. 2013 Nov 1;29(21):2669-77. doi: 10.1093/bioinformatics/btt476. Epub 2013 Aug 29.
6
Acetic acid bacteria, newly emerging symbionts of insects.醋酸菌，昆虫新兴共生菌。
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