Infectious Disease Surveillance Center, National Institute of Infectious Diseases, Tokyo, Japan.
Antimicrobial Resistance Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Sci Rep. 2020 Mar 5;10(1):4139. doi: 10.1038/s41598-020-60659-2.
A multispecies outbreak of IMP-6 carbapenemase-producing Enterobacterales (IMP-6-CPE) occurred at an acute care hospital in Japan. This study was conducted to understand the mechanisms of IMP-6-CPE transmission by pulsed-field gel electrophoresis (PFGE), multilocus sequence typing and whole-genome sequencing (WGS), and identify risk factors for IMP-6-CPE acquisition in patients who underwent abdominal surgery. Between July 2013 and March 2014, 22 hospitalized patients infected or colonized with IMP-6-CPE (Escherichia coli [n = 8], Klebsiella oxytoca [n = 5], Enterobacter cloacae [n = 5], Klebsiella pneumoniae [n = 3] and Klebsiella aerogenes [n = 1]) were identified. There were diverse PFGE profiles and sequence types (STs) in most of the species except for K. oxytoca. All isolates of K. oxytoca belonged to ST29 with similar PFGE profiles, suggesting their clonal transmission. Plasmid analysis by WGS revealed that all 22 isolates but one shared a ca. 50-kb IncN plasmid backbone with bla suggesting interspecies gene transmission, and typing of plasmids explained epidemiological links among cases. A case-control study showed pancreatoduodenectomy, changing drains in fluoroscopy room, continuous peritoneal lavage and enteric fistula were associated with IMP-6-CPE acquisition among the patients. Plasmid analysis of isolates in an outbreak of IMP-6-CPE suggested interspecies gene transmission and helped to clarify hidden epidemiological links between cases.
日本一家急症医院发生了多种物种的 IMP-6 碳青霉烯酶产生肠杆菌科(IMP-6-CPE)爆发。本研究旨在通过脉冲场凝胶电泳(PFGE)、多位点序列分型和全基因组测序(WGS)了解 IMP-6-CPE 传播的机制,并确定接受腹部手术的患者获得 IMP-6-CPE 的危险因素。2013 年 7 月至 2014 年 3 月期间,鉴定出 22 名感染或定植 IMP-6-CPE 的住院患者(大肠杆菌[n=8],产酸克雷伯菌[n=5],阴沟肠杆菌[n=5],肺炎克雷伯菌[n=3]和产气肠杆菌[n=1])。除产酸克雷伯菌外,大多数物种的 PFGE 图谱和序列类型(ST)各不相同。除产酸克雷伯菌外,所有分离株均属于 ST29 且 PFGE 图谱相似,提示其克隆传播。WGS 的质粒分析显示,除 1 株外,所有 22 株分离株均共享 bla 附近约 50-kb IncN 质粒骨架,提示种间基因传播,而质粒分型解释了病例之间的流行病学联系。病例对照研究显示,胰十二指肠切除术、在透视室更换引流管、持续腹腔灌洗和肠瘘与患者获得 IMP-6-CPE 有关。IMP-6-CPE 爆发中分离株的质粒分析提示种间基因传播,并有助于阐明病例之间隐藏的流行病学联系。