• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

纳米孔测序在血液疾病中的应用:众多机遇

Nanopore Sequencing in Blood Diseases: A Wide Range of Opportunities.

作者信息

Minervini Crescenzio Francesco, Cumbo Cosimo, Orsini Paola, Anelli Luisa, Zagaria Antonella, Specchia Giorgina, Albano Francesco

机构信息

Department of Emergency and Organ Transplantation (D.E.T.O.), Hematology Section, University of Bari, Bari, Italy.

出版信息

Front Genet. 2020 Feb 19;11:76. doi: 10.3389/fgene.2020.00076. eCollection 2020.

DOI:10.3389/fgene.2020.00076
PMID:32140171
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7043087/
Abstract

The molecular pathogenesis of hematological diseases is often driven by genetic and epigenetic alterations. Next-generation sequencing has considerably increased our genomic knowledge of these disorders becoming ever more widespread in clinical practice. In 2012 Oxford Nanopore Technologies (ONT) released the MinION, the first long-read nanopore-based sequencer, overcoming the main limits of short-reads sequences generation. In the last years, several nanopore sequencing approaches have been performed in various "-omic" sciences; this review focuses on the challenge to introduce ONT devices in the hematological field, showing advantages, disadvantages and future perspectives of this technology in the precision medicine era.

摘要

血液系统疾病的分子发病机制通常由遗传和表观遗传改变驱动。下一代测序极大地增加了我们对这些疾病的基因组学认识,并且在临床实践中越来越普遍。2012年,牛津纳米孔技术公司(ONT)发布了MinION,这是首款基于纳米孔的长读长测序仪,克服了短读长序列生成的主要局限。在过去几年中,多种纳米孔测序方法已在各种“组学”科学中得到应用;本综述重点关注在血液学领域引入ONT设备所面临的挑战,展示该技术在精准医学时代的优势、劣势及未来前景。

相似文献

1
Nanopore Sequencing in Blood Diseases: A Wide Range of Opportunities.纳米孔测序在血液疾病中的应用:众多机遇
Front Genet. 2020 Feb 19;11:76. doi: 10.3389/fgene.2020.00076. eCollection 2020.
2
Nanopore Sequencing Using the Full-Length 16S rRNA Gene for Detection of Blood-Borne Bacteria in Dogs Reveals a Novel Species of Hemotropic Mycoplasma.使用全长 16S rRNA 基因的纳米孔测序检测犬血液中的细菌,揭示了一种新型血源性支原体。
Microbiol Spectr. 2022 Dec 21;10(6):e0308822. doi: 10.1128/spectrum.03088-22. Epub 2022 Oct 17.
3
Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants.牛津纳米孔技术在丙型肝炎全基因组测序及宿主内病毒变异体鉴定中的应用。
BMC Genomics. 2021 Mar 2;22(1):148. doi: 10.1186/s12864-021-07460-1.
4
Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.利用 MinION 长读测序技术评估组装多种细菌基因组的策略。
BMC Genomics. 2019 Jan 9;20(1):23. doi: 10.1186/s12864-018-5381-7.
5
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.使用牛津纳米孔MinION测序仪对天然酵母分离株进行从头组装和群体基因组调查。
Gigascience. 2017 Feb 1;6(2):1-13. doi: 10.1093/gigascience/giw018.
6
Assessing the performance of the Oxford Nanopore Technologies MinION.评估牛津纳米孔技术公司的MinION测序仪的性能。
Biomol Detect Quantif. 2015 Mar;3:1-8. doi: 10.1016/j.bdq.2015.02.001.
7
Oxford Nanopore MinION Sequencing and Genome Assembly.牛津纳米孔MinION测序与基因组组装
Genomics Proteomics Bioinformatics. 2016 Oct;14(5):265-279. doi: 10.1016/j.gpb.2016.05.004. Epub 2016 Sep 17.
8
High precision genome sequencing of engineered Gluconobacter oxydans 621H by combining long nanopore and short accurate Illumina reads.通过结合长纳米孔和短准确 Illumina 读取对工程化氧化葡萄糖酸杆菌 621H 进行高精度基因组测序。
J Biotechnol. 2017 Sep 20;258:197-205. doi: 10.1016/j.jbiotec.2017.04.016. Epub 2017 Apr 19.
9
High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing.使用针对 MinION 和 Flongle 长读长纳米孔测序的博伊顿氏菌专用碱基调用器生成高纯度的牛支原体基因组组装。
BMC Bioinformatics. 2020 Nov 11;21(1):517. doi: 10.1186/s12859-020-03856-0.
10
Genome assembly using Nanopore-guided long and error-free DNA reads.使用纳米孔引导的长且无错误的DNA reads进行基因组组装。
BMC Genomics. 2015 Apr 20;16(1):327. doi: 10.1186/s12864-015-1519-z.

引用本文的文献

1
Multiclonal Profiling of FLT3-ITD in AML Using MinION Sequencing: A Tailored Clustering Approach to Enhance Subclonal Detection.使用MinION测序对急性髓系白血病中FLT3-ITD进行多克隆分析:一种增强亚克隆检测的定制聚类方法。
Onco Targets Ther. 2025 Jul 19;18:811-820. doi: 10.2147/OTT.S526628. eCollection 2025.
2
From Sanger to Oxford Nanopore MinION Technology: The Impact of Third-Generation Sequencing on Genetic Hematological Diagnosis.从桑格测序到牛津纳米孔MinION技术:第三代测序对遗传性血液学诊断的影响
Cancers (Basel). 2025 May 29;17(11):1811. doi: 10.3390/cancers17111811.
3
Genewise detection of variants in gene using nanopore sequencing.使用纳米孔测序技术对基因中的变异进行基因特异性检测。
Front Genet. 2024 Nov 29;15:1493295. doi: 10.3389/fgene.2024.1493295. eCollection 2024.
4
Comparative Analyses of Targeted Myeloid Cancer Next-Generation Sequencing Panel in Fresh Blood, Bone Marrow and FFPE Material.靶向性髓系肿瘤二代测序panel 在新鲜血、骨髓和 FFPE 标本中的对比分析。
Int J Mol Sci. 2024 Mar 21;25(6):3534. doi: 10.3390/ijms25063534.
5
The potential of 3rd-generation nanopore sequencing for B-cell clonotyping in lymphoproliferative disorders.第三代纳米孔测序在淋巴增殖性疾病中进行B细胞克隆分型的潜力。
EJHaem. 2023 Nov 23;5(1):290-293. doi: 10.1002/jha2.815. eCollection 2024 Feb.
6
The whole is greater than the sum of its parts: Long-read sequencing for solving clinical problems in haematology.整体大于部分之和:长读长测序技术用于解决血液学临床问题
J Cell Mol Med. 2024 Feb;28(3):e17961. doi: 10.1111/jcmm.17961. Epub 2024 Jan 23.
7
Nanopore Single-molecule Analysis of Biomarkers: Providing Possible Clues to Disease Diagnosis.生物标志物的纳米孔单分子分析:为疾病诊断提供可能线索
Trends Analyt Chem. 2023 May;162. doi: 10.1016/j.trac.2023.117060. Epub 2023 Apr 11.
8
Case report: biallelic mutations in acute myeloid leukemia.病例报告:急性髓系白血病中的双等位基因突变
Front Oncol. 2023 Jun 28;13:1205220. doi: 10.3389/fonc.2023.1205220. eCollection 2023.
9
Biohybrid Membrane Formation by Directed Insertion of Aquaporin into a Solid-State Nanopore.水通道蛋白定向插入固态纳米孔形成生物杂交膜。
ACS Appl Mater Interfaces. 2022 Oct 26;14(42):48029-48036. doi: 10.1021/acsami.2c14250. Epub 2022 Oct 16.
10
Evaluation of the Available Variant Calling Tools for Oxford Nanopore Sequencing in Breast Cancer.评估适用于乳腺癌牛津纳米孔测序的变异调用工具。
Genes (Basel). 2022 Sep 3;13(9):1583. doi: 10.3390/genes13091583.

本文引用的文献

1
Nanopore sequencing of brain-derived full-length circRNAs reveals circRNA-specific exon usage, intron retention and microexons.脑源性全长环状 RNA 的纳米孔测序揭示了环状 RNA 特异性外显子使用、内含子保留和 microexon。
Nat Commun. 2021 Aug 10;12(1):4825. doi: 10.1038/s41467-021-24975-z.
2
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing.使用独特分子标识符结合纳米孔或PacBio测序的高精度长读长扩增子序列。
Nat Methods. 2021 Feb;18(2):165-169. doi: 10.1038/s41592-020-01041-y. Epub 2021 Jan 11.
3
Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing.使用纳米孔测序对人类细胞系进行染色质可及性和甲基化的同时分析。
Nat Methods. 2020 Dec;17(12):1191-1199. doi: 10.1038/s41592-020-01000-7. Epub 2020 Nov 23.
4
Decoding the epitranscriptional landscape from native RNA sequences.从天然 RNA 序列中解码转录后修饰图谱。
Nucleic Acids Res. 2021 Jan 25;49(2):e7. doi: 10.1093/nar/gkaa620.
5
Nanopore Targeted Sequencing for Rapid Gene Mutations Detection in Acute Myeloid Leukemia.纳米孔靶向测序在急性髓系白血病快速基因突变检测中的应用。
Genes (Basel). 2019 Dec 9;10(12):1026. doi: 10.3390/genes10121026.
6
Nanopore native RNA sequencing of a human poly(A) transcriptome.人 poly(A) 转录组的纳米孔天然 RNA 测序。
Nat Methods. 2019 Dec;16(12):1297-1305. doi: 10.1038/s41592-019-0617-2. Epub 2019 Nov 18.
7
Long-read sequencing reveals the complex splicing profile of the psychiatric risk gene CACNA1C in human brain.长读测序揭示了人类大脑中精神疾病风险基因 CACNA1C 的复杂剪接谱。
Mol Psychiatry. 2020 Jan;25(1):37-47. doi: 10.1038/s41380-019-0583-1. Epub 2019 Nov 6.
8
Impact of FLT3-ITD allele ratio and ITD length on therapeutic outcome in cytogenetically normal AML patients without NPM1 mutation.FLT3-ITD等位基因比例和ITD长度对无NPM1突变的细胞遗传学正常AML患者治疗结果的影响
Bone Marrow Transplant. 2020 Apr;55(4):740-748. doi: 10.1038/s41409-019-0721-z. Epub 2019 Oct 23.
9
Accurate detection of mA RNA modifications in native RNA sequences.准确检测天然 RNA 序列中的 mA RNA 修饰。
Nat Commun. 2019 Sep 9;10(1):4079. doi: 10.1038/s41467-019-11713-9.
10
Rapid detection of chromosomal translocation and precise breakpoint characterization in acute myeloid leukemia by nanopore long-read sequencing.通过纳米孔长读长测序快速检测急性髓系白血病中的染色体易位并精确表征断点
Cancer Genet. 2019 Nov;239:22-25. doi: 10.1016/j.cancergen.2019.08.005. Epub 2019 Aug 23.