Institute of Molecular Biology, Academia Sinica, Nangang, Taipei 115, Taiwan.
Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei 106, Taiwan.
Proc Natl Acad Sci U S A. 2020 Mar 24;117(12):6762-6770. doi: 10.1073/pnas.1919726117. Epub 2020 Mar 11.
Nematode-trapping fungi (NTF) are a group of specialized microbial predators that consume nematodes when food sources are limited. Predation is initiated when conserved nematode ascaroside pheromones are sensed, followed by the development of complex trapping devices. To gain insights into the coevolution of this interkingdom predator-prey relationship, we investigated natural populations of nematodes and NTF that we found to be ubiquitous in soils. species were sympatric with various nematode species and behaved as generalist predators. The ability to sense prey among wild isolates of varied greatly, as determined by the number of traps after exposure to While some strains were highly sensitive to and the nematode pheromone ascarosides, others responded only weakly. Furthermore, strains that were highly sensitive to the nematode prey also developed traps faster. The polymorphic nature of trap formation correlated with competency in prey killing, as well as with the phylogeny of natural strains, calculated after assembly and annotation of the genomes of 20 isolates. A chromosome-level genome assembly and annotation were established for one of the most sensitive wild isolates, and deletion of the only G-protein β-subunit-encoding gene of nearly abolished trap formation. In summary, our study establishes a highly responsive wild isolate as a model strain for the study of fungus-nematode interactions and demonstrates that trap formation is a fitness character in generalist predators of the nematode-trapping fungus family.
线虫诱捕真菌(NTF)是一组专门的微生物捕食者,当食物来源有限时,它们会捕食线虫。当保守的线虫ascaroside 信息素被感知到时,捕食就会开始,随后会发展出复杂的诱捕装置。为了深入了解这种跨界捕食者-猎物关系的共同进化,我们调查了无处不在的土壤中线虫和 NTF 的自然种群。我们发现,在各种土壤中,与各种线虫物种共生的 物种表现为广义捕食者。通过暴露于 后捕捉器的数量来确定,野生分离株中感知猎物的能力差异很大。虽然一些菌株对 和线虫信息素 ascrosides 高度敏感,但其他菌株的反应则很微弱。此外,对线虫猎物高度敏感的菌株也能更快地形成捕捉器。捕捉器形成的多态性与捕食能力以及 自然菌株的系统发育相关,这是通过对 20 个分离株的基因组进行组装和注释后计算得出的。我们为一个最敏感的野生分离株建立了一个染色体水平的基因组组装和注释,并删除了 中唯一的 G 蛋白 β 亚基编码基因,几乎完全阻止了捕捉器的形成。总之,我们的研究确定了一个高度敏感的野生分离株作为研究真菌-线虫相互作用的模型菌株,并证明了捕捉器的形成是线虫诱捕真菌家族中广义捕食者的一个适应特征。