• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过氢氘交换质谱技术窥探整合膜蛋白的分子机制。

A glimpse into the molecular mechanism of integral membrane proteins through hydrogen-deuterium exchange mass spectrometry.

机构信息

Laboratory for the Structure and Function of Biological Membranes, Center for Structural Biology and Bioinformatics, Université Libre de Bruxelles, Brussels, Belgium.

Department of Chemistry, King's College London, London, UK.

出版信息

Protein Sci. 2020 Jun;29(6):1285-1301. doi: 10.1002/pro.3853. Epub 2020 Mar 25.

DOI:10.1002/pro.3853
PMID:32170968
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7255514/
Abstract

Integral membrane proteins (IMPs) control countless fundamental biological processes and constitute the majority of drug targets. For this reason, uncovering their molecular mechanism of action has long been an intense field of research. They are, however, notoriously difficult to work with, mainly due to their localization within the heterogeneous of environment of the biological membrane and the instability once extracted from the lipid bilayer. High-resolution structures have unveiled many mechanistic aspects of IMPs but also revealed that the elucidation of static pictures has limitations. Hydrogen-deuterium exchange coupled to mass spectrometry (HDX-MS) has recently emerged as a powerful biophysical tool for interrogating the conformational dynamics of proteins and their interactions with ligands. Its versatility has proven particularly useful to reveal mechanistic aspects of challenging classes of proteins such as IMPs. This review recapitulates the accomplishments of HDX-MS as it has matured into an essential tool for membrane protein structural biologists.

摘要

整合膜蛋白(IMP)控制着无数基本的生物过程,并且构成了大多数药物靶点。出于这个原因,揭示它们的作用机制一直是一个激烈的研究领域。然而,由于它们在生物膜异质环境中的定位以及从脂质双层中提取后的不稳定性,IMP 非常难以研究。高分辨率结构揭示了 IMP 的许多机械方面,但也表明阐明静态图片具有局限性。氢氘交换与质谱(HDX-MS)的结合最近已成为一种强大的生物物理工具,可用于研究蛋白质的构象动力学及其与配体的相互作用。其多功能性已被证明对揭示具有挑战性的蛋白质(如 IMP)的机械方面特别有用。这篇综述回顾了 HDX-MS 的成就,因为它已经成熟为膜蛋白结构生物学家的重要工具。

相似文献

1
A glimpse into the molecular mechanism of integral membrane proteins through hydrogen-deuterium exchange mass spectrometry.通过氢氘交换质谱技术窥探整合膜蛋白的分子机制。
Protein Sci. 2020 Jun;29(6):1285-1301. doi: 10.1002/pro.3853. Epub 2020 Mar 25.
2
Hydrogen/deuterium exchange-mass spectrometry of integral membrane proteins in native-like environments: current scenario and the way forward.在类似天然环境下对整合膜蛋白进行氢/氘交换-质谱分析:当前现状与未来方向。
Essays Biochem. 2023 Mar 29;67(2):187-200. doi: 10.1042/EBC20220173.
3
Hydrogen/Deuterium Exchange Mass Spectrometry for the Structural Analysis of Detergent-Solubilized Membrane Proteins.氢/氘交换质谱法用于去污剂增溶膜蛋白的结构分析。
Methods Mol Biol. 2020;2127:339-358. doi: 10.1007/978-1-0716-0373-4_22.
4
Bridging protein structure, dynamics, and function using hydrogen/deuterium-exchange mass spectrometry.利用氢/氘交换质谱法连接蛋白质结构、动力学和功能。
Protein Sci. 2020 Apr;29(4):843-855. doi: 10.1002/pro.3790. Epub 2019 Nov 25.
5
Probing Protein-Membrane Interactions and Dynamics Using Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS).利用氢氘交换质谱法(HDX-MS)探测蛋白质-膜相互作用和动态。
Methods Mol Biol. 2021;2263:465-485. doi: 10.1007/978-1-0716-1197-5_22.
6
Conformational analysis of g protein-coupled receptor signaling by hydrogen/deuterium exchange mass spectrometry.利用氢/氘交换质谱法对G蛋白偶联受体信号传导进行构象分析。
Methods Enzymol. 2015;557:261-78. doi: 10.1016/bs.mie.2014.12.004. Epub 2015 Mar 29.
7
Effective application of bicelles for conformational analysis of G protein-coupled receptors by hydrogen/deuterium exchange mass spectrometry.双分子层囊泡在氢/氘交换质谱法用于G蛋白偶联受体构象分析中的有效应用。
J Am Soc Mass Spectrom. 2015 May;26(5):808-817. doi: 10.1007/s13361-015-1083-4. Epub 2015 Mar 5.
8
A Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) Platform for Investigating Peptide Biosynthetic Enzymes.一种用于研究肽生物合成酶的氢-氘交换质谱(HDX-MS)平台。
J Vis Exp. 2020 May 4(159). doi: 10.3791/61053.
9
Integrating hydrogen-deuterium exchange mass spectrometry with molecular dynamics simulations to probe lipid-modulated conformational changes in membrane proteins.将氢氘交换质谱与分子动力学模拟相结合,以探测脂质调节的膜蛋白构象变化。
Nat Protoc. 2019 Nov;14(11):3183-3204. doi: 10.1038/s41596-019-0219-6. Epub 2019 Oct 11.
10
Structural predictions of the functions of membrane proteins from HDX-MS.从 HDX-MS 预测膜蛋白的功能结构。
Biochem Soc Trans. 2020 Jun 30;48(3):971-979. doi: 10.1042/BST20190880.

引用本文的文献

1
In-Cell Fast Photochemical Oxidation Interrogates the Native Structure of Integral Membrane Proteins.细胞内快速光化学氧化法探究整合膜蛋白的天然结构
Angew Chem Int Ed Engl. 2025 May;64(19):e202424779. doi: 10.1002/anie.202424779. Epub 2025 Mar 9.
2
Recalibrating Protection Factors Using Millisecond Hydrogen/Deuterium Exchange Mass Spectrometry.使用毫秒级氢/氘交换质谱法重新校准保护因子
Anal Chem. 2025 Feb 11;97(5):2648-2657. doi: 10.1021/acs.analchem.4c03631. Epub 2025 Jan 29.
3
GPR180 is a new member of the Golgi-dynamics domain seven-transmembrane helix protein family.

本文引用的文献

1
Bridging protein structure, dynamics, and function using hydrogen/deuterium-exchange mass spectrometry.利用氢/氘交换质谱法连接蛋白质结构、动力学和功能。
Protein Sci. 2020 Apr;29(4):843-855. doi: 10.1002/pro.3790. Epub 2019 Nov 25.
2
Dynamics of ABC Transporter P-glycoprotein in Three Conformational States.ABC 转运蛋白 P-糖蛋白三种构象态的动力学。
Sci Rep. 2019 Oct 22;9(1):15092. doi: 10.1038/s41598-019-50578-2.
3
Integrating hydrogen-deuterium exchange mass spectrometry with molecular dynamics simulations to probe lipid-modulated conformational changes in membrane proteins.
GPR180 是高尔基体动力学域七跨膜螺旋蛋白家族的新成员。
Commun Biol. 2024 Nov 28;7(1):1588. doi: 10.1038/s42003-024-07260-9.
4
Strategies for Top-Down Hydrogen Deuterium Exchange-Mass Spectrometry: A Mini Review and Perspective.自上而下的氢氘交换-质谱策略:综述与展望
J Mass Spectrom. 2024 Nov;59(11):e5097. doi: 10.1002/jms.5097.
5
MSe Collision Energy Optimization for the Analysis of Membrane Proteins Using HDX-cIMS.利用 HDX-cIMS 分析膜蛋白的 MSe 碰撞能优化。
J Am Soc Mass Spectrom. 2024 Jul 3;35(7):1383-1389. doi: 10.1021/jasms.4c00093. Epub 2024 Jun 6.
6
A scalable overexpression of a thermostable recombinant poly-histidine tag carboxyl esterase under lambda promoter: purification, characterization, and protein modelling.在λ启动子下热稳定重组多组氨酸标签羧基酯酶的可扩展过表达:纯化、表征及蛋白质建模
J Genet Eng Biotechnol. 2023 Dec 12;21(1):165. doi: 10.1186/s43141-023-00610-w.
7
Membrane Protein Binding Interactions Studied in Live Cells via Diethylpyrocarbonate Covalent Labeling Mass Spectrometry.通过二乙基焦碳酸酯共价标记质谱法研究活细胞中的膜蛋白结合相互作用。
Anal Chem. 2023 May 9;95(18):7178-7185. doi: 10.1021/acs.analchem.2c05616. Epub 2023 Apr 27.
8
Hydrogen/deuterium exchange-mass spectrometry of integral membrane proteins in native-like environments: current scenario and the way forward.在类似天然环境下对整合膜蛋白进行氢/氘交换-质谱分析:当前现状与未来方向。
Essays Biochem. 2023 Mar 29;67(2):187-200. doi: 10.1042/EBC20220173.
9
Mass spectrometry of intact membrane proteins: shifting towards a more native-like context.完整膜蛋白的质谱分析:向更接近天然状态的环境转变。
Essays Biochem. 2023 Mar 29;67(2):201-213. doi: 10.1042/EBC20220169.
10
Thermodynamic architecture and conformational plasticity of GPCRs.GPCR 的热力学结构和构象可塑性。
Nat Commun. 2023 Jan 9;14(1):128. doi: 10.1038/s41467-023-35790-z.
将氢氘交换质谱与分子动力学模拟相结合,以探测脂质调节的膜蛋白构象变化。
Nat Protoc. 2019 Nov;14(11):3183-3204. doi: 10.1038/s41596-019-0219-6. Epub 2019 Oct 11.
4
Structural basis of Cullin 2 RING E3 ligase regulation by the COP9 signalosome.COP9 信号osome 调控 Cullin 2 RING E3 连接酶的结构基础。
Nat Commun. 2019 Aug 23;10(1):3814. doi: 10.1038/s41467-019-11772-y.
5
Improving the Sequence Coverage of Integral Membrane Proteins during Hydrogen/Deuterium Exchange Mass Spectrometry Experiments.提高氢/氘交换质谱实验中整合膜蛋白的序列覆盖率。
Anal Chem. 2019 Sep 3;91(17):10970-10978. doi: 10.1021/acs.analchem.9b00973. Epub 2019 Aug 13.
6
HDX-MS reveals nucleotide-dependent, anti-correlated opening and closure of SecA and SecY channels of the bacterial translocon.HDX-MS 揭示了细菌易位子中 SecA 和 SecY 通道的核苷酸依赖性、反相关的开启和关闭。
Elife. 2019 Jul 10;8:e47402. doi: 10.7554/eLife.47402.
7
Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments.氢氘交换质谱(HDX-MS)实验的操作、解释和报告建议。
Nat Methods. 2019 Jul;16(7):595-602. doi: 10.1038/s41592-019-0459-y. Epub 2019 Jun 27.
8
Substrate-induced conformational dynamics of the dopamine transporter.底物诱导多巴胺转运体的构象动力学。
Nat Commun. 2019 Jun 20;10(1):2714. doi: 10.1038/s41467-019-10449-w.
9
Mechanism of allosteric modulation of P-glycoprotein by transport substrates and inhibitors.转运底物和抑制剂对 P-糖蛋白变构调节的作用机制。
Science. 2019 May 17;364(6441):689-692. doi: 10.1126/science.aav9406.
10
Assembly of a GPCR-G Protein Complex.G 蛋白偶联受体- G 蛋白复合物的组装。
Cell. 2019 May 16;177(5):1232-1242.e11. doi: 10.1016/j.cell.2019.04.022. Epub 2019 May 9.