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NAC 家族转录因子在胡萝卜中的研究:基因组和转录组分析及对非生物胁迫的响应。

NAC Family Transcription Factors in Carrot: Genomic and Transcriptomic Analysis and Responses to Abiotic Stresses.

机构信息

State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, China.

Ministry of Agriculture and Rural Affairs Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, College of Horticulture, Nanjing Agricultural University, Nanjing, China.

出版信息

DNA Cell Biol. 2020 May;39(5):816-827. doi: 10.1089/dna.2019.5208. Epub 2020 Mar 12.

Abstract

Carrot is an annual or biennial herbaceous plant of the Apiaceae family. Carrot is an important vegetable, and its fresh taproot, which contains rich nutrients, is the main edible part. In the life cycle of carrot, NAC family transcription factors (TFs) are involved in almost all physiological processes. The function of NAC TFs in carrot remains unclear. In this study, 73 NAC family TF members in carrot were identified and characterized using transcriptome and genome databases. These members were divided into 14 subfamilies. Multiple sequence alignment was performed, and the conserved domains, common motifs, phylogenetic tree, and interaction network of DcNAC proteins were predicted and analyzed. Results showed that the same group of NAC proteins of carrot had high similarity. Eight genes were selected to detect their expression profiles under abiotic stress treatments. The expression levels of the selected genes significantly increased under treatments with low temperature, high temperature, drought, and salt stress. Results provide potentially useful information for further analysis of the roles of DcNAC transcription factors in carrot.

摘要

胡萝卜是伞形科的一种一年生或二年生草本植物。胡萝卜是一种重要的蔬菜,其新鲜的直根富含营养,是主要的可食用部分。在胡萝卜的生命周期中,NAC 家族转录因子(TFs)参与了几乎所有的生理过程。NAC TFs 在胡萝卜中的功能尚不清楚。在这项研究中,使用转录组和基因组数据库鉴定和描述了胡萝卜中的 73 个 NAC 家族 TF 成员。这些成员被分为 14 个亚家族。进行了多序列比对,并预测和分析了 DcNAC 蛋白的保守结构域、常见基序、系统发育树和互作网络。结果表明,胡萝卜的同一组 NAC 蛋白具有很高的相似性。选择了 8 个基因来检测它们在非生物胁迫处理下的表达谱。所选基因的表达水平在低温、高温、干旱和盐胁迫处理下显著增加。研究结果为进一步分析 DcNAC 转录因子在胡萝卜中的作用提供了有价值的信息。

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