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用九里香生物化合物靶向爱泼斯坦-巴尔病毒核抗原1(EBNA-1):一种计算机模拟方法。

Targeting Epstein-Barr virus nuclear antigen 1 (EBNA-1) with Murraya koengii bio-compounds: An in-silico approach.

作者信息

Mathivadani V, Smiline A S, Priyadharsini J V

出版信息

Acta Virol. 2020;64(1):93-99. doi: 10.4149/av_2020_111.

Abstract

Epstein-Barr virus (EBV), a B lymphotrophic herpesvirus associated with various forms of tumors, exhibits several latency phases with expressed EBV nuclear antigen 1 (EBNA-1). In the search of novel EBV-inhibiting targets, to curb the menace of EBV-borne lymphotropic transformations, EBNA-1 protein might serve as a best target for novel  antiviral natural compounds. This study is thus aimed to explore the inhibitory potential of Muuraya koengii bioactive compounds isomahanine, murrayanol and mahanimbine against the EBNA-1 of EBV. 3D structure of EBNA-1 was retrieved from the PDB data bank with further optimization of both the protein and ligands. In-silico inhibitory potential of the selected M. koengii bio-compounds against EBNA-1 as well as the molecular properties of the derivatives against EBNA-1 were assessed. Murrayanol seems to be a potent inhibitory drug to target EBNA-1 with a promising binding energy of -7.21 with two hydrogen bonds. Drug likeliness parameters recorded murrayanol to be the most promising of the tested compounds, followed by isomahanine. Molecular docking evaluations show that EBNA-1 might be inhibited with M. koengii biocompounds. Keywords: EBV; EBNA; M. koengii; in-silico.

摘要

爱泼斯坦-巴尔病毒(EBV)是一种与多种肿瘤形式相关的嗜B淋巴细胞疱疹病毒,它表现出几个带有表达的EBV核抗原1(EBNA-1)的潜伏阶段。在寻找新型EBV抑制靶点以遏制EBV介导的嗜淋巴细胞转化的威胁时,EBNA-1蛋白可能是新型抗病毒天然化合物的最佳靶点。因此,本研究旨在探索九里香生物活性化合物异马汉宁、默里香醇和马汉宁对EBV的EBNA-1的抑制潜力。从蛋白质数据银行(PDB)检索EBNA-1的三维结构,并对蛋白质和配体进行进一步优化。评估了所选九里香生物化合物对EBNA-1的计算机模拟抑制潜力以及衍生物对EBNA-1的分子特性。默里香醇似乎是一种靶向EBNA-1的有效抑制药物,具有-7.21的有前景的结合能和两个氢键。药物相似性参数表明默里香醇是测试化合物中最有前景的,其次是异马汉宁。分子对接评估表明EBNA-1可能被九里香生物化合物抑制。关键词:EBV;EBNA;九里香;计算机模拟

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