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DSM 22607的基因组分析草案,该菌株表现出功能未知的转运蛋白同源物的异常扩增。

Draft Genome Analysis of DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function.

作者信息

Coil David A, Jospin Guillaume, Eisen Jonathan A

机构信息

Genome Center, University of California, Davis, CA, United States.

Department of Evolution and Ecology, University of California, Davis, CA, United States.

出版信息

J Genomics. 2020 Feb 21;8:25-29. doi: 10.7150/jgen.43162. eCollection 2020.

DOI:10.7150/jgen.43162
PMID:32190126
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7064737/
Abstract

was first formally described in 2012 as a member of a novel species, genus, and proposed family of Christensenellaceae. was later shown in one study to be part of the most heritable taxonomic group in the human gut microbiome and to be enriched in people with low body mass index (BMI). Mouse work demonstrated that injection of cultured into germ-free mice prevented the onset of obesity after a fecal transplant to the mice from high BMI individuals. Here we describe the genome sequence of DSM 22607. Examination and analysis of the annotation revealed an unusually high number of genes predicted to be involved in carbohydrate metabolism, many of which were multiple homologs of RbsA, RbsB and RbsC, which together make up the Ribose ABC Transport System. These genes may be also involved in quorum sensing which could potentially relate to the importance of in the gut microbiome.

摘要

2012年,它首次被正式描述为一个新物种、新属以及拟议的克里斯滕森菌科家族的成员。后来在一项研究中表明,它是人类肠道微生物群中遗传性最强的分类群的一部分,并且在体重指数(BMI)较低的人群中富集。小鼠实验表明,将培养的[具体名称未给出]注射到无菌小鼠体内,在将粪便从高BMI个体移植到这些小鼠后,可预防肥胖的发生。在这里,我们描述了[具体名称未给出]DSM 22607的基因组序列。对注释的检查和分析揭示了预计参与碳水化合物代谢的基因数量异常之多,其中许多是RbsA、RbsB和RbsC的多个同源物,它们共同构成了核糖ABC转运系统。这些基因可能也参与群体感应,这可能与[具体名称未给出]在肠道微生物群中的重要性有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8860/7064737/6791fbc7dabe/jgenv08p0025g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8860/7064737/6791fbc7dabe/jgenv08p0025g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8860/7064737/6791fbc7dabe/jgenv08p0025g001.jpg

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本文引用的文献

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The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health.人类肠道细菌 Christensenellaceae 分布广泛、可遗传,并与健康有关。
BMC Biol. 2019 Oct 28;17(1):83. doi: 10.1186/s12915-019-0699-4.
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High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.高通量 ANI 分析 9 万余组原核基因组揭示了清晰的物种界限。
Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9.
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First report of human infection by Christensenella minuta, a gram-negative, strickly anaerobic rod that inhabits the human intestine.
微小克里斯滕森菌致人类感染的首例报告,微小克里斯滕森菌是一种革兰氏阴性、严格厌氧的杆菌,寄居于人类肠道。
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Genome Sequence of Christensenella minuta DSM 22607T.微小克里斯滕森菌DSM 22607T的基因组序列
Genome Announc. 2017 Jan 12;5(2):e01451-16. doi: 10.1128/genomeA.01451-16.
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Christensenella timonensis, a new bacterial species isolated from the human gut.蒂莫内氏克里斯滕森菌,一种从人体肠道中分离出的新细菌物种。
New Microbes New Infect. 2016 May 21;13:32-3. doi: 10.1016/j.nmni.2016.05.010. eCollection 2016 Sep.
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Christensenella massiliensis, a new bacterial species isolated from the human gut.马西利亚克里斯滕森菌,一种从人类肠道中分离出的新细菌物种。
New Microbes New Infect. 2016 May 4;12:69-70. doi: 10.1016/j.nmni.2016.04.014. eCollection 2016 Jul.
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM:评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
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Manipulation of the quorum sensing signal AI-2 affects the antibiotic-treated gut microbiota.群体感应信号AI-2的调控会影响经抗生素处理的肠道微生物群。
Cell Rep. 2015 Mar 24;10(11):1861-71. doi: 10.1016/j.celrep.2015.02.049.
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Bioinformatics. 2015 Feb 15;31(4):587-9. doi: 10.1093/bioinformatics/btu661. Epub 2014 Oct 22.