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精准医学——网络来拯救。

Precision medicine - networks to the rescue.

机构信息

Center for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute, Boston, MA, USA; Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.

Center for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute, Boston, MA, USA; Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.

出版信息

Curr Opin Biotechnol. 2020 Jun;63:177-189. doi: 10.1016/j.copbio.2020.02.005. Epub 2020 Mar 18.

DOI:10.1016/j.copbio.2020.02.005
PMID:32199228
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7308189/
Abstract

Genetic variants are often not predictive of the phenotypic outcome. Individuals carrying the same pathogenic variant, associated with Mendelian or complex disease, can manifest to different extents, from severe-to-mild to no disease. Improving the accuracy of predicted clinical manifestations of genetic variants has emerged as one of the biggest challenges in precision medicine, which can only be addressed by understanding the mechanisms underlying genotype-phenotype relationships. Efforts to understand the molecular basis of these relationships have identified complex systems of interacting biomolecules that underlie cellular function. Here, we review recent advances in how modeling cellular systems as networks of interacting proteins has fueled identification of disease-associated processes, delineation of underlying molecular mechanisms, and prediction of the pathogenicity of variants. This review is intended to be inspiring for clinicians, geneticists, and network biologists alike who aim to jointly advance our understanding of human disease and accelerate progress toward precision medicine.

摘要

遗传变异通常不能预测表型结果。携带相同致病变异的个体,与孟德尔或复杂疾病相关,可以表现出不同的程度,从严重到轻度到没有疾病。提高遗传变异预测临床表型的准确性已成为精准医学面临的最大挑战之一,只有通过了解基因型-表型关系的机制才能解决这一问题。为了理解这些关系的分子基础,人们已经确定了复杂的相互作用生物分子系统,这些系统是细胞功能的基础。在这里,我们回顾了最近在将细胞系统建模为相互作用蛋白网络方面的进展,这些进展推动了对疾病相关过程的识别、对潜在分子机制的描述以及对变异致病性的预测。这篇综述旨在为临床医生、遗传学家和网络生物学家提供灵感,他们的目标是共同提高对人类疾病的认识,并加速迈向精准医学的进程。

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本文引用的文献

1
A reference map of the human binary protein interactome.人类二进制蛋白质相互作用组参考图谱。
Nature. 2020 Apr;580(7803):402-408. doi: 10.1038/s41586-020-2188-x. Epub 2020 Apr 8.
2
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.在人类种群中,广泛的遗传变异破坏了整个等位基因频率范围内的蛋白质相互作用。
Nat Commun. 2019 Sep 12;10(1):4141. doi: 10.1038/s41467-019-11959-3.
3
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.遗传和新生的自闭症遗传风险影响共享网络。
Brief Bioinform. 2023 Nov 22;25(1). doi: 10.1093/bib/bbad491.
4
Missense variant interaction scanning reveals a critical role of the FERM domain for tumor suppressor protein NF2 conformation and function.错义变异相互作用扫描揭示了 FERM 结构域对肿瘤抑制蛋白 NF2 构象和功能的关键作用。
Life Sci Alliance. 2023 Jun 6;6(8). doi: 10.26508/lsa.202302043. Print 2023 Aug.
5
Network location and clustering of genetic mutations determine chronicity in a stylized model of genetic diseases.网络位置和遗传突变聚类决定了遗传疾病理想化模型中的慢性病程。
Sci Rep. 2022 Nov 19;12(1):19906. doi: 10.1038/s41598-022-23775-9.
6
On the limits of graph neural networks for the early diagnosis of Alzheimer's disease.图神经网络在阿尔茨海默病早期诊断中的局限性研究。
Sci Rep. 2022 Oct 21;12(1):17632. doi: 10.1038/s41598-022-21491-y.
7
De novo individualized disease modules reveal the synthetic penetrance of genes and inform personalized treatment regimens.从头开始个体化疾病模块揭示了基因的综合外显率,并为个性化治疗方案提供信息。
Genome Res. 2022 Jan;32(1):124-134. doi: 10.1101/gr.275889.121. Epub 2021 Dec 7.
8
Pharmacologically controlling protein-protein interactions through epichaperomes for therapeutic vulnerability in cancer.通过表观衔接组学对蛋白-蛋白相互作用进行药理学控制,以寻找癌症治疗的脆弱性。
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9
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis.IID 2021:通过增加覆盖度、增强注释和富集分析实现针对具体上下文的蛋白质相互作用分析。
Nucleic Acids Res. 2022 Jan 7;50(D1):D640-D647. doi: 10.1093/nar/gkab1034.
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Microb Cell. 2021 Jul 2;8(8):164-183. doi: 10.15698/mic2021.08.756. eCollection 2021 Aug 2.
Cell. 2019 Aug 8;178(4):850-866.e26. doi: 10.1016/j.cell.2019.07.015.
4
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6
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Nucleic Acids Res. 2019 Jan 8;47(D1):D581-D589. doi: 10.1093/nar/gky1037.