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sp. nov.,分离自一个淡水池塘。

sp. nov., isolated from a freshwater pond.

机构信息

Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung University of Science and Technology, Taiwan, ROC, Kaohsiung City 811.

Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju-gunJeollabuk-do 55365, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2020 Apr;70(4):2888-2895. doi: 10.1099/ijsem.0.004117. Epub 2020 Mar 26.

DOI:10.1099/ijsem.0.004117
PMID:32213255
Abstract

A novel bacterial strain, designated KMB7, isolated from a freshwater pond in Taiwan, was characterized using a polyphasic taxonomic approach. Cells were Gram-stain-negative, motile by means of a single polar flagellum, rod-shaped and formed cream colonies. Optimal growth occurred at 25 °C, pH 7, and in the absence of NaCl. Phylogenetic analyses based on 16S rRNA gene sequences and an up-to-date bacterial core gene set (92 protein clusters) indicated that strain KMB7 is affiliated with species in the genus . The 16S rRNA gene sequence similarity indicated that strain KMB7 is closely related to species within the genus (95.2-97.6 % sequence similarity) and is most similar to CS-6 (97.6 %), followed by B6 (97.5 %). The average nucleotide identity and digital DNA-DNA hybridization identity between strain KMB7 and the closely related strains were 74.6-78.0 % and 19.0-21.2 %, respectively. The major fatty acids of strain KMB7 were summed feature 3 (C ω and/or C ω), C ω and C. The polar lipid profile consisted of a mixture of phosphatidylethanolamine, phosphatidylglycerol, phosphatidylserine, diphosphatidylglycerol and four unidentified phospholipids. The sole isoprenoid quinone was ubiquinone-8 (Q-8). Genomic DNA G+C content of strain KMB7 was 65.4 %. On the basis of phenotypic and genotypic properties and phylogenetic inference, strain KMB7 should be classified in a novel species of the genus , for which the name sp. nov. is proposed. The type strain is KMB7 (=BCRC 81156=LMG 30924=KCTC 62867).

摘要

一株从台湾淡水池塘中分离得到的新型细菌菌株 KMB7,通过多相分类学方法进行了特征描述。细胞革兰氏染色阴性,通过单一极生鞭毛运动,呈杆状,形成奶油色菌落。最佳生长条件为 25°C、pH 值 7 和无 NaCl。基于 16S rRNA 基因序列和最新的细菌核心基因集(92 个蛋白簇)的系统发育分析表明,菌株 KMB7 与属内的物种有关。16S rRNA 基因序列相似性表明,菌株 KMB7 与属内的种最为相似(95.2-97.6%序列相似性),与 CS-6(97.6%)最为相似,其次是 B6(97.5%)。菌株 KMB7 与密切相关菌株的平均核苷酸同一性和数字 DNA-DNA 杂交同一性分别为 74.6-78.0%和 19.0-21.2%。菌株 KMB7 的主要脂肪酸为 summed feature 3(C ω 和/或 C ω)、C ω 和 C。极性脂谱由磷脂酰乙醇胺、磷脂酰甘油、磷脂酰丝氨酸、双磷脂酰甘油和四种未鉴定的磷脂组成。唯一的异戊二烯醌是泛醌-8(Q-8)。菌株 KMB7 的基因组 DNA G+C 含量为 65.4%。基于表型和基因型特性以及系统发育推断,菌株 KMB7 应归类为属的一个新型种,建议命名为 sp. nov.。模式菌株为 KMB7(=BCRC 81156=LMG 30924=KCTC 62867)。

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