• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于环聚合物分子动力学的微正则速率:直接射击法、驻相法和最大熵法。

Microcanonical rates from ring-polymer molecular dynamics: Direct-shooting, stationary-phase, and maximum-entropy approaches.

作者信息

Tao Xuecheng, Shushkov Philip, Miller Thomas F

机构信息

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.

出版信息

J Chem Phys. 2020 Mar 31;152(12):124117. doi: 10.1063/1.5144307.

DOI:10.1063/1.5144307
PMID:32241127
Abstract

We address the calculation of microcanonical reaction rates for processes involving significant nuclear quantum effects using ring-polymer molecular dynamics (RPMD), both with and without electronically non-adiabatic transitions. After illustrating the shortcomings of the naive free-particle direct-shooting method, in which the temperature of the internal ring-polymer modes is set to the translational energy scale, we investigate alternative strategies based on the expression for the microcanonical rate in terms of the inverse Laplace transform of the thermal reaction rate. It is shown that simple application of the stationary-phase approximation (SPA) dramatically improves the performance of the microcanonical rates using RPMD, particularly in the low-energy region where tunneling dominates. Using the SPA as a Bayesian prior, numerically exact RPMD microcanonical rates are then obtained using maximum entropy inversion of the thermal reaction rates for both electronically adiabatic and non-adiabatic model systems. Finally, the direct-shooting method is revisited using the SPA-determined temperature for the internal ring-polymer modes, leading to a simple, direct-simulation method with improved accuracy in the tunneling regime. This work suggests a general strategy for the extraction of microcanonical dynamical quantities from RPMD (or other approximate thermal) simulations.

摘要

我们使用环聚合物分子动力学(RPMD)来处理涉及显著核量子效应的过程的微正则反应速率计算,包括有无电子非绝热跃迁的情况。在说明了将内部环聚合物模式的温度设定为平移能量尺度的朴素自由粒子直接射击方法的缺点之后,我们基于微正则速率关于热反应速率的逆拉普拉斯变换的表达式研究了替代策略。结果表明,平稳相位近似(SPA)的简单应用显著提高了使用RPMD计算微正则速率的性能,特别是在隧穿占主导的低能量区域。将SPA用作贝叶斯先验,然后通过对电子绝热和非绝热模型系统的热反应速率进行最大熵反演,获得了数值精确的RPMD微正则速率。最后,使用SPA确定的内部环聚合物模式温度重新审视直接射击方法,从而得到一种在隧穿区域具有更高精度的简单直接模拟方法。这项工作提出了一种从RPMD(或其他近似热)模拟中提取微正则动力学量的通用策略。

相似文献

1
Microcanonical rates from ring-polymer molecular dynamics: Direct-shooting, stationary-phase, and maximum-entropy approaches.基于环聚合物分子动力学的微正则速率:直接射击法、驻相法和最大熵法。
J Chem Phys. 2020 Mar 31;152(12):124117. doi: 10.1063/1.5144307.
2
Kinetically constrained ring-polymer molecular dynamics for non-adiabatic chemical reactions.动力学约束环聚合物分子动力学中非绝热化学反应。
J Chem Phys. 2014 Feb 14;140(6):064103. doi: 10.1063/1.4863919.
3
Kinetically-constrained ring-polymer molecular dynamics for non-adiabatic chemistries involving solvent and donor-acceptor dynamical effects.动力学约束环聚合物分子动力学用于涉及溶剂和给体-受体动力学效应的非绝热化学反应。
Faraday Discuss. 2016 Dec 22;195:191-214. doi: 10.1039/c6fd00143b.
4
Ring-polymer molecular dynamics rate-theory in the deep-tunneling regime: Connection with semiclassical instanton theory.环聚合物分子动力学在深遂穿区域的速率理论:与半经典瞬时理论的联系。
J Chem Phys. 2009 Dec 7;131(21):214106. doi: 10.1063/1.3267318.
5
Cayley modification for strongly stable path-integral and ring-polymer molecular dynamics.凯莱修正的强稳定路径积分和环聚合物分子动力学。
J Chem Phys. 2019 Sep 28;151(12):124103. doi: 10.1063/1.5120282.
6
Direct simulation of proton-coupled electron transfer across multiple regimes.质子耦合电子转移跨越多个区域的直接模拟。
J Chem Phys. 2013 Apr 7;138(13):134109. doi: 10.1063/1.4797462.
7
Direct simulation of electron transfer using ring polymer molecular dynamics: comparison with semiclassical instanton theory and exact quantum methods.使用环聚合物分子动力学直接模拟电子转移:与半经典瞬时理论和精确量子方法的比较。
J Chem Phys. 2011 Aug 21;135(7):074106. doi: 10.1063/1.3624766.
8
A comparative study of the centroid and ring-polymer molecular dynamics methods for approximating quantum time correlation functions from path integrals.用于从路径积分近似量子时间关联函数的质心和环聚合物分子动力学方法的比较研究。
J Chem Phys. 2009 May 14;130(18):184105. doi: 10.1063/1.3126950.
9
Quantum mechanical correlation functions, maximum entropy analytic continuation, and ring polymer molecular dynamics.量子力学关联函数、最大熵解析延拓与环聚合物分子动力学。
J Chem Phys. 2007 Nov 7;127(17):174108. doi: 10.1063/1.2786451.
10
How to remove the spurious resonances from ring polymer molecular dynamics.如何从环聚合物分子动力学中去除虚假共振。
J Chem Phys. 2014 Jun 21;140(23):234116. doi: 10.1063/1.4883861.

引用本文的文献

1
Nuclear Quantum Effects on the Nature of Hydroboration Selectivity: Experimental Effects of First-Collision Tunneling.核量子效应硼氢化选择性的本质:首次碰撞隧穿的实验效应。
J Am Chem Soc. 2024 Sep 25;146(38):25907-25911. doi: 10.1021/jacs.4c09306. Epub 2024 Sep 16.
2
Nonadiabatic Tunneling in Chemical Reactions.化学反应中的非绝热隧穿
J Phys Chem Lett. 2024 Jul 25;15(29):7387-7397. doi: 10.1021/acs.jpclett.4c01098. Epub 2024 Jul 12.
3
Accurate Reaction Probabilities for Translational Energies on Both Sides of the Barrier of Dissociative Chemisorption on Metal Surfaces.
金属表面解离化学吸附势垒两侧平动能量的精确反应概率
J Phys Chem Lett. 2024 Mar 7;15(9):2566-2572. doi: 10.1021/acs.jpclett.3c03408. Epub 2024 Feb 28.
4
Improved microcanonical instanton theory.改进的微正则瞬子理论。
Faraday Discuss. 2022 Oct 21;238(0):204-235. doi: 10.1039/d2fd00063f.