Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA.
Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA; Biomedical Sciences Graduate Program, University of California, San Diego, La Jolla, CA, USA.
Mol Cell. 2020 Apr 2;78(1):9-29. doi: 10.1016/j.molcel.2020.03.011.
RNA-binding proteins (RBPs) comprise a large class of over 2,000 proteins that interact with transcripts in all manner of RNA-driven processes. The structures and mechanisms that RBPs use to bind and regulate RNA are incredibly diverse. In this review, we take a look at the components of protein-RNA interaction, from the molecular level to multi-component interaction. We first summarize what is known about protein-RNA molecular interactions based on analyses of solved structures. We additionally describe software currently available for predicting protein-RNA interaction and other resources useful for the study of RBPs. We then review the structure and function of seventeen known RNA-binding domains and analyze the hydrogen bonds adopted by protein-RNA structures on a domain-by-domain basis. We conclude with a summary of the higher-level mechanisms that regulate protein-RNA interactions.
RNA 结合蛋白(RBPs)是一大类超过 2000 种的蛋白质,它们以各种方式与 RNA 驱动的过程中的转录本相互作用。RBP 用于结合和调节 RNA 的结构和机制非常多样化。在这篇综述中,我们从分子水平到多组分相互作用,来探讨蛋白-RNA 相互作用的组成部分。我们首先根据已解决结构的分析,总结了已知的蛋白-RNA 分子相互作用。此外,我们还描述了当前可用于预测蛋白-RNA 相互作用的软件和其他对 RBPs 研究有用的资源。然后,我们回顾了十七种已知 RNA 结合结构域的结构和功能,并分析了基于域的蛋白-RNA 结构采用的氢键。最后,我们总结了调节蛋白-RNA 相互作用的更高层次的机制。