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《木姜子基因组与樟科的演化》。

The Litsea genome and the evolution of the laurel family.

机构信息

State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, 100091, China.

Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou, 311400, China.

出版信息

Nat Commun. 2020 Apr 3;11(1):1675. doi: 10.1038/s41467-020-15493-5.

Abstract

The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents.

摘要

桂冠科因其香味、多变的花序和有争议的系统发育地位而引起了人们的关注。在这里,我们呈现了一个樟科山胡椒基因组的染色体水平组装,以及许多其他樟科植物的低覆盖率基因组和转录组数据。系统发育基因组学分析表明,在木兰类植物的位置上存在系统发育上的不一致,这表明在单子叶植物、双子叶植物和木兰类植物的分化过程中存在不完全谱系分选。一个古老的全基因组复制(WGD)事件发生在樟目和木兰目分化之前;随后,在三个樟科系统发育分支中几乎同时发生了独立的 WGD。樟科植物的系统发育关系与花序的分化相对应,这一点可以从参与决定樟科植物圆锥花序结构的保守基因 FUWA 的系统发育中得到证明。负责产生樟科植物特定挥发性化合物的单萜合酶的功能得到了验证。我们的工作揭示了樟科植物的进化、花进化和特定香味的遗传基础。

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