Chen Shi-Pin, Sun Wei-Hong, Xiong Yuan-Fang, Jiang Yu-Ting, Liu Xue-Die, Liao Xing-Yu, Zhang Di-Yang, Jiang Shu-Zhen, Li Yu, Liu Bin, Ma Liang, Yu Xia, He Li, Liu Bao, Feng Jin-Lin, Feng Li-Zhen, Wang Zhi-Wen, Zou Shuang-Quan, Lan Si-Ren, Liu Zhong-Jian
College of Forestry, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at the College of Landscape Architecture, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
Hortic Res. 2020 Sep 1;7:146. doi: 10.1038/s41438-020-00368-z. eCollection 2020.
Lauraceae includes the genus , and the family is linked to the evolution of magnoliids. We sequenced the genome of Nanmu. The assembled genome size was 989.19 Mb, with a contig N50 value of 2.05 Mb. A total of 28,198 protein-coding genes were annotated in . Whole-genome duplication (WGD) analysis showed that Lauraceae has experienced two WGD events; the older WGD event occurred just before the divergence of Lauraceae and Magnoliales, and the more recent WGD was shared by all lineages of Lauraceae. The phylogenetic tree showed that magnoliids form a sister clade to monocots and eudicots. We also identified 63 MADS-box genes, including -like genes that may be related to the regulation of roots and -like genes encoding GH3 proteins, which are involved in photomorphogenesis. -like genes involved in light signal-mediated pedicel or stem development were also identified. Four and three -homologous genes related to lignin biosynthesis were identified. These genes may be associated with the formation of straight trunks in . Overall, the reference genome provides insight into the origin, evolution, and diversification of and other magnoliids.
樟科包括该属,且该科与木兰类植物的进化相关。我们对楠木的基因组进行了测序。组装后的基因组大小为989.19 Mb,重叠群N50值为2.05 Mb。共注释出28,198个蛋白质编码基因。全基因组复制(WGD)分析表明樟科经历了两次WGD事件;较古老的WGD事件发生在樟科与木兰目分化之前,而最近的WGD事件为樟科所有谱系所共有。系统发育树表明木兰类植物形成了单子叶植物和双子叶植物的姐妹分支。我们还鉴定出63个MADS-box基因,包括可能与楠木根的调控有关的类似基因以及编码参与光形态建成的GH3蛋白的类似基因。还鉴定出了参与光信号介导的花梗或茎发育的类似基因。鉴定出了四个与木质素生物合成相关的和三个同源基因。这些基因可能与楠木直干的形成有关。总体而言,楠木参考基因组为楠木及其他木兰类植物的起源、进化和多样化提供了见解。