相似文献
1
Comparative genomics in infectious disease.
Curr Opin Microbiol. 2020 Feb;53:61-70. doi: 10.1016/j.mib.2020.02.009. Epub 2020 Apr 2.
2
Genomic perspectives on the evolution and spread of bacterial pathogens.
Proc Biol Sci. 2015 Dec 22;282(1821):20150488. doi: 10.1098/rspb.2015.0488.
3
A core genome approach that enables prospective and dynamic monitoring of infectious outbreaks.
Sci Rep. 2019 May 24;9(1):7808. doi: 10.1038/s41598-019-44189-0.
4
Emergence and Spread of Antimicrobial Resistance: Recent Insights from Bacterial Population Genomics.
Curr Top Microbiol Immunol. 2016;398:35-53. doi: 10.1007/82_2016_505.
5
Human infectious diseases in the genomics era: where do we go from here?
Genome Biol. 2014 Nov 22;15(11):529. doi: 10.1186/s13059-014-0529-5.
6
Development of Phylodynamic Methods for Bacterial Pathogens.
Trends Microbiol. 2021 Sep;29(9):788-797. doi: 10.1016/j.tim.2021.02.008. Epub 2021 Mar 15.
7
[New bacteria causing infectious diseases].
Rev Clin Esp. 1996 Jul;196 Suppl 2:59-65; discussion 66.
8
Bacterial genomics in infectious disease and the clinical pathology laboratory.
Arch Pathol Lab Med. 2012 Nov;136(11):1414-22. doi: 10.5858/arpa.2012-0025-RA. Epub 2012 Mar 22.
9
The impact of comparative genomics on infectious disease research.
Microbes Infect. 2006 May;8(6):1613-22. doi: 10.1016/j.micinf.2005.11.019. Epub 2006 Jan 27.
10
Microbial pathogenesis: genomics and beyond.
Science. 1997 May 2;276(5313):707-12. doi: 10.1126/science.276.5313.707.
引用本文的文献
1
High intestinal carriage of in healthy individuals and ICU patients in Hangzhou, China.
Microbiol Spectr. 2024 Jul 2;12(7):e0338523. doi: 10.1128/spectrum.03385-23. Epub 2024 May 21.
2
The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.
Microb Genom. 2023 May;9(5). doi: 10.1099/mgen.0.001001.
3
Phylogenomics of nontuberculous mycobacteria respiratory infections in people with cystic fibrosis.
Paediatr Respir Rev. 2023 Jun;46:63-70. doi: 10.1016/j.prrv.2023.02.001. Epub 2023 Feb 10.
4
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes.
Genome Biol. 2021 Dec 21;22(1):349. doi: 10.1186/s13059-021-02536-3.
5
Cross-species RNA-seq for deciphering host-microbe interactions.
Nat Rev Genet. 2021 Jun;22(6):361-378. doi: 10.1038/s41576-021-00326-y. Epub 2021 Feb 17.
本文引用的文献
1
WhatsGNU: a tool for identifying proteomic novelty.
Genome Biol. 2020 Mar 5;21(1):58. doi: 10.1186/s13059-020-01965-w.
2
Current Affairs of Microbial Genome-Wide Association Studies: Approaches, Bottlenecks and Analytical Pitfalls.
Front Microbiol. 2020 Jan 30;10:3119. doi: 10.3389/fmicb.2019.03119. eCollection 2019.
3
Previously undetected super-spreading of revealed by deep sequencing.
Elife. 2020 Feb 4;9:e53245. doi: 10.7554/eLife.53245.
4
The EnteroBase user's guide, with case studies on transmissions, phylogeny, and core genomic diversity.
Genome Res. 2020 Jan;30(1):138-152. doi: 10.1101/gr.251678.119. Epub 2019 Dec 6.
5
Dashing: fast and accurate genomic distances with HyperLogLog.
Genome Biol. 2019 Dec 4;20(1):265. doi: 10.1186/s13059-019-1875-0.
6
Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scales.
PeerJ. 2019 Nov 5;7:e8013. doi: 10.7717/peerj.8013. eCollection 2019.
7
Genomic and epidemiological evidence of bacterial transmission from probiotic capsule to blood in ICU patients.
Nat Med. 2019 Nov;25(11):1728-1732. doi: 10.1038/s41591-019-0626-9. Epub 2019 Nov 7.
8
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.
Nucleic Acids Res. 2020 Jan 8;48(D1):D517-D525. doi: 10.1093/nar/gkz935.
9
PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria.
Gigascience. 2019 Oct 1;8(10). doi: 10.1093/gigascience/giz119.
10
Phylogenomic analysis of gastroenteritis-associated in England and Wales over a 7-year period indicates distribution of clonal toxigenic strains in multiple outbreaks and extensive involvement of enterotoxin-encoding (CPE) plasmids.
Microb Genom. 2019 Oct;5(10). doi: 10.1099/mgen.0.000297. Epub 2019 Sep 20.
Zotero 插件