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sp. nov.,分离自黄河样本。

sp. nov., isolated from a Yellow River sample.

机构信息

College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.

Synthetic Biology Engineering Lab of Henan Province, College of Life Sciences and Technology, Xinxiang Medical University, Xinxiang 453003, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 May;70(5):3084-3090. doi: 10.1099/ijsem.0.004134.

Abstract

A novel actinobacterium, designated strain CFH S0261, was isolated from a sediment sample of the Yellow River. The taxonomic position of the strain was investigated by using a polyphasic approach. Cells of strain CFH S0261 were Gram-reaction-positive, aerobic, non-motile. Growth occurs at 15-37 °C, pH 6.0-8.0 and with 0-9.0 % (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain CFH S0261 was a member of the genus . The 16S rRNA gene sequence similarity indicated that strain CFH S0261 is most closely related to the type strains of LC11 (98.95 %), LC2 (98.81 %) and IMSNU 22139 (98.73 %). The whole-genome of CFH S0261 showed a G+C content of 69.5 mol%. The ANI values and DDH values between CFH S0261 and the other species of the genus were found to be low (ANIb <90.61 % and DDH <53.40 %). The cell wall diamino acid in the peptidoglycan of strain CFH S0261 was -diaminopimelic acid and the whole-cell hydrolysate comprised arabinose, galactose, glucose, rhamnose and ribose. The predominant menaquinone was MK-9(H). The major cellular fatty acids were C, iso-C and iso-C. The polar lipid profile contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannosides and four unidentified glycolipids. On the basis of phenotypic, genotypic and phylogenetic data, strain CFH S0261 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is CFH S0261 (=KCTC 39515 =CCTCC AA 2014028).

摘要

一株新的放线菌,命名为 CFH S0261 菌株,从黄河沉积物样本中分离得到。该菌株的分类地位通过多相研究方法进行了研究。CFH S0261 菌株的细胞革兰氏阳性,需氧,不运动。生长温度为 15-37°C,pH 值为 6.0-8.0,盐度为 0-9.0%(w/v)。基于 16S rRNA 基因序列的系统发育分析表明,CFH S0261 菌株是 属的成员。16S rRNA 基因序列相似性表明,CFH S0261 菌株与模式菌株 LC11(98.95%)、LC2(98.81%)和 IMSNU 22139(98.73%)最为密切相关。CFH S0261 的全基因组 G+C 含量为 69.5mol%。CFH S0261 与属内其他种之间的 ANI 值和 DDH 值均较低(ANIb<90.61%和 DDH<53.40%)。CFH S0261 菌株肽聚糖中的二氨基庚二酸为 -二氨基庚二酸,全细胞水解物包含阿拉伯糖、半乳糖、葡萄糖、鼠李糖和核糖。主要的类异戊二烯醌为 MK-9(H)。主要的细胞脂肪酸为 C 16:0、iso-C 15:0 和 iso-C 17:0。极性脂谱包含二磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、磷脂酰肌醇、磷脂酰肌醇甘露糖苷和四种未鉴定的糖脂。基于表型、基因型和系统发育数据,CFH S0261 菌株代表了 属的一个新种,建议将其命名为 sp. nov.。模式菌株为 CFH S0261(=KCTC 39515=CCTCC AA 2014028)。

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