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比较统计分析以估算生态毒理学中的阈值。

Comparing statistical analyses to estimate thresholds in ecotoxicology.

机构信息

Department of Aquatic Health Sciences, College of William and Mary, Virginia Institute of Marine Science, Gloucester Point, Virginia, United States of America.

出版信息

PLoS One. 2020 Apr 8;15(4):e0231149. doi: 10.1371/journal.pone.0231149. eCollection 2020.

Abstract

Different methods are used in ecotoxicology to estimate thresholds in survival data. This paper uses Monte Carlo simulations to evaluate the accuracy of three methods (maximum likelihood (MLE) and Markov Chain Monte Carlo estimates (Bayesian) of the no-effect concentration (NEC) model and Piecewise regression) in estimating true and apparent thresholds in survival experiments with datasets having different slopes, background mortalities, and experimental designs. Datasets were generated with models that include a threshold parameter (NEC) or not (log-logistic). Accuracy was estimated using root-mean square errors (RMSEs), and RMSE ratios were used to estimate the relative improvement in accuracy by each design and method. All methods had poor performances in shallow and intermediate curves, and accuracy increased with the slope of the curve. The EC5 was generally the most accurate method to estimate true and apparent thresholds, except for steep curves with a true threshold. In that case, the EC5 underestimated the threshold, and MLE and Bayesian estimates were more accurate. In most cases, information criteria weights did not provide strong evidence in support of the true model, suggesting that identifying the true model is a difficult task. Piecewise regression was the only method where the information criteria weights had high support for the threshold model; however, the rate of spurious threshold model selection was also high. Even though thresholds are an attractive concept from a regulatory and practical point of view, threshold estimates, under the experimental conditions evaluated in this work, should be carefully used in survival analysis or when there are any biological reasons to support the existence of a threshold.

摘要

在生态毒理学中,有不同的方法来估计生存数据中的阈值。本文通过蒙特卡罗模拟,评估了三种方法(最大似然法(MLE)和马尔可夫链蒙特卡罗估计法(贝叶斯)的无效应浓度(NEC)模型和分段回归)在估计生存实验中真实和表观阈值的准确性,这些实验数据集具有不同的斜率、背景死亡率和实验设计。数据集是用包含阈值参数(NEC)或不包含阈值参数(对数逻辑)的模型生成的。准确性用均方根误差(RMSE)来估计,用 RMSE 比值来估计每种设计和方法的准确性相对提高。所有方法在浅斜率和中等斜率曲线中表现不佳,准确性随着曲线斜率的增加而提高。EC5 通常是估计真实和表观阈值最准确的方法,除了具有真实阈值的陡峭曲线。在这种情况下,EC5 低估了阈值,MLE 和贝叶斯估计则更准确。在大多数情况下,信息准则权重并没有为真实模型提供有力的证据,这表明识别真实模型是一项困难的任务。分段回归是唯一一种信息准则权重对阈值模型有高度支持的方法;然而,虚假阈值模型选择的比例也很高。尽管从监管和实际的角度来看,阈值是一个有吸引力的概念,但在本工作评估的实验条件下,阈值估计值在生存分析中或在有任何生物学理由支持存在阈值的情况下,应谨慎使用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/27b1/7141675/191564bf1a24/pone.0231149.g001.jpg

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