• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

两个家族的故事:全基因组和片段重复导致窄叶羽扇豆(L.)谷氨酰胺合成酶和磷酸烯醇丙酮酸羧化酶多样性。

A Tale of Two Families: Whole Genome and Segmental Duplications Underlie Glutamine Synthetase and Phosphoenolpyruvate Carboxylase Diversity in Narrow-Leafed Lupin ( L.).

机构信息

Department of Biometry and Bioinformatics, Institute of Plant Genetics, Polish Academy of Sciences, 60-479 Poznan, Poland.

Department of Genomics, Institute of Plant Genetics, Polish Academy of Sciences, 60-479 Poznan, Poland.

出版信息

Int J Mol Sci. 2020 Apr 8;21(7):2580. doi: 10.3390/ijms21072580.

DOI:10.3390/ijms21072580
PMID:32276381
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7177731/
Abstract

Narrow-leafed lupin ( L.) has recently been supplied with advanced genomic resources and, as such, has become a well-known model for molecular evolutionary studies within the legume family-a group of plants able to fix nitrogen from the atmosphere. The phylogenetic position of lupins in Papilionoideae and their evolutionary distance to other higher plants facilitates the use of this model species to improve our knowledge on genes involved in nitrogen assimilation and primary metabolism, providing novel contributions to our understanding of the evolutionary history of legumes. In this study, we present a complex characterization of two narrow-leafed lupin gene families-glutamine synthetase () and phosphoenolpyruvate carboxylase (). We combine a comparative analysis of gene structures and a synteny-based approach with phylogenetic reconstruction and reconciliation of the gene family and species history in order to examine events underlying the extant diversity of both families. Employing the available evidence, we show the impact of duplications on the initial complement of the analyzed gene families within the genistoid clade and posit that the function of duplicates has been largely retained. In terms of a broader perspective, our results concerning and gene families corroborate earlier findings pointing to key whole genome duplication/triplication event(s) affecting the genistoid lineage.

摘要

窄叶羽扇豆(L.)最近获得了先进的基因组资源,因此成为豆科植物分子进化研究的知名模式植物 - 一类能够从大气中固定氮的植物。羽扇豆在 Papilionoideae 中的系统发育位置及其与其他高等植物的进化距离,便于利用该模式物种来提高我们对参与氮同化和初级代谢的基因的认识,为我们理解豆科植物的进化历史提供了新的贡献。在这项研究中,我们对两种窄叶羽扇豆基因家族-谷氨酰胺合成酶(GS)和磷酸烯醇丙酮酸羧激酶(PEPCK)进行了复杂的表征。我们结合基因结构的比较分析和基于基因同线性的方法,以及系统发育重建和基因家族与物种历史的协调,以研究导致这两个家族现存多样性的事件。利用现有证据,我们展示了复制对分析基因家族在金雀花科内初始组成的影响,并假设重复的功能在很大程度上得到了保留。从更广泛的角度来看,我们关于 GS 和 PEPCK 基因家族的结果证实了先前的发现,即影响金雀花科系的全基因组加倍/三倍化事件。

相似文献

1
A Tale of Two Families: Whole Genome and Segmental Duplications Underlie Glutamine Synthetase and Phosphoenolpyruvate Carboxylase Diversity in Narrow-Leafed Lupin ( L.).两个家族的故事:全基因组和片段重复导致窄叶羽扇豆(L.)谷氨酰胺合成酶和磷酸烯醇丙酮酸羧化酶多样性。
Int J Mol Sci. 2020 Apr 8;21(7):2580. doi: 10.3390/ijms21072580.
2
Integration of Lupinus angustifolius L. (narrow-leafed lupin) genome maps and comparative mapping within legumes.窄叶羽扇豆(Lupinus angustifolius L.)基因组图谱整合及豆科植物内的比较图谱绘制
Chromosome Res. 2016 Sep;24(3):355-78. doi: 10.1007/s10577-016-9526-8. Epub 2016 May 11.
3
Expansion of the phosphatidylethanolamine binding protein family in legumes: a case study of Lupinus angustifolius L. FLOWERING LOCUS T homologs, LanFTc1 and LanFTc2.豆科植物中磷脂酰乙醇胺结合蛋白家族的扩展:以窄叶羽扇豆(Lupinus angustifolius L.)为例,开花位点T同源基因LanFTc1和LanFTc2
BMC Genomics. 2016 Oct 21;17(1):820. doi: 10.1186/s12864-016-3150-z.
4
New evidence of ancestral polyploidy in the Genistoid legume Lupinus angustifolius L. (narrow-leafed lupin).豆科染料木亚科窄叶羽扇豆(Lupinus angustifolius L.)存在祖先多倍体的新证据。
Theor Appl Genet. 2014 May;127(5):1237-49. doi: 10.1007/s00122-014-2294-y. Epub 2014 Mar 15.
5
A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.羽扇豆(窄叶羽扇豆)——一种新兴健康食品的全基因组序列草图:对植物-微生物相互作用和豆科植物进化的见解
Plant Biotechnol J. 2017 Mar;15(3):318-330. doi: 10.1111/pbi.12615. Epub 2016 Sep 23.
6
Legume isoflavone synthase genes have evolved by whole-genome and local duplications yielding transcriptionally active paralogs.豆科植物异黄酮合酶基因通过全基因组和局部重复进化,产生了转录活性旁系同源基因。
Plant Sci. 2017 Nov;264:149-167. doi: 10.1016/j.plantsci.2017.09.007. Epub 2017 Sep 18.
7
Impact of Chromosomal Rearrangements on the Interpretation of Lupin Karyotype Evolution.染色体重排对羽扇豆核型进化解释的影响。
Genes (Basel). 2019 Apr 1;10(4):259. doi: 10.3390/genes10040259.
8
Identification and profiling of narrow-leafed lupin (Lupinus angustifolius) microRNAs during seed development.窄叶羽扇豆( Lupinus angustifolius )种子发育过程中 microRNAs 的鉴定和分析。
BMC Genomics. 2019 Feb 14;20(1):135. doi: 10.1186/s12864-019-5521-8.
9
Phenotypic characterisation and linkage mapping of domestication syndrome traits in yellow lupin (Lupinus luteus L.).黄羽扇豆( Lupinus luteus L. )驯化综合征特征的表型特征和连锁图谱绘制。
Theor Appl Genet. 2020 Oct;133(10):2975-2987. doi: 10.1007/s00122-020-03650-9. Epub 2020 Jul 18.
10
The western Mediterranean region provided the founder population of domesticated narrow-leafed lupin.该地区提供了西方地中海地区家养窄叶羽扇豆的原始种群。
Theor Appl Genet. 2018 Dec;131(12):2543-2554. doi: 10.1007/s00122-018-3171-x. Epub 2018 Sep 17.

引用本文的文献

1
Identification of the glutamine synthetase (GS) gene family in four wheat species and functional analysis of Ta4D.GSe in Arabidopsis thaliana.鉴定四个小麦物种中的谷氨酰胺合成酶(GS)基因家族和拟南芥中 Ta4D.GSe 的功能分析。
Plant Mol Biol. 2022 Sep;110(1-2):93-106. doi: 10.1007/s11103-022-01287-4. Epub 2022 Jun 18.
2
The Puzzling Fate of a Lupin Chromosome Revealed by Reciprocal Oligo-FISH and BAC-FISH Mapping.通过互换来福探针和 BAC 来福探针杂交定位揭示了一个狼疮染色体的神秘命运。
Genes (Basel). 2020 Dec 10;11(12):1489. doi: 10.3390/genes11121489.
3
Photoperiod and Vernalization Control of Flowering-Related Genes: A Case Study of the Narrow-Leafed Lupin ( L.).

本文引用的文献

1
Candidate Domestication-Related Genes Revealed by Expression Quantitative Trait Loci Mapping of Narrow-Leafed Lupin ( L.).窄叶羽扇豆(L.)表达数量性状基因座定位揭示的候选驯化相关基因
Int J Mol Sci. 2019 Nov 12;20(22):5670. doi: 10.3390/ijms20225670.
2
Evolutionary Diversification of Primary Metabolism and Its Contribution to Plant Chemical Diversity.初级代谢的进化多样化及其对植物化学多样性的贡献。
Front Plant Sci. 2019 Jul 10;10:881. doi: 10.3389/fpls.2019.00881. eCollection 2019.
3
New Insights into Long Terminal Repeat Retrotransposons in Mulberry Species.
光周期和春化作用对开花相关基因的调控:以窄叶羽扇豆(L.)为例的研究
Front Plant Sci. 2020 Oct 26;11:572135. doi: 10.3389/fpls.2020.572135. eCollection 2020.
桑树物种中长末端重复逆转录转座子的新见解。
Genes (Basel). 2019 Apr 9;10(4):285. doi: 10.3390/genes10040285.
4
Impact of Chromosomal Rearrangements on the Interpretation of Lupin Karyotype Evolution.染色体重排对羽扇豆核型进化解释的影响。
Genes (Basel). 2019 Apr 1;10(4):259. doi: 10.3390/genes10040259.
5
Robust predictions of specialized metabolism genes through machine learning.通过机器学习对特殊代谢基因进行可靠预测。
Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):2344-2353. doi: 10.1073/pnas.1817074116. Epub 2019 Jan 23.
6
Legume Cytosolic and Plastid Acetyl-Coenzyme-A Carboxylase Genes Differ by Evolutionary Patterns and Selection Pressure Schemes Acting before and after Whole-Genome Duplications.豆科植物胞质和质体乙酰辅酶A羧化酶基因在全基因组复制前后的进化模式和选择压力模式上存在差异。
Genes (Basel). 2018 Nov 21;9(11):563. doi: 10.3390/genes9110563.
7
Metabolic Determinants of Enzyme Evolution in a Genome-Scale Bacterial Metabolic Network.在一个基于基因组规模的细菌代谢网络中,酶进化的代谢决定因素。
Genome Biol Evol. 2018 Nov 1;10(11):3076-3088. doi: 10.1093/gbe/evy234.
8
Chromosomal distribution of soybean retrotransposon SORE-1 suggests its recent preferential insertion into euchromatic regions.大豆反转录转座子SORE-1的染色体分布表明其近期倾向于插入常染色质区域。
Chromosome Res. 2018 Sep;26(3):199-210. doi: 10.1007/s10577-018-9579-y. Epub 2018 May 22.
9
RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss.RANGER-DTL 2.0:通过复制、转移和丢失进行基因家族进化的严格重建。
Bioinformatics. 2018 Sep 15;34(18):3214-3216. doi: 10.1093/bioinformatics/bty314.
10
Genetic and epigenetic divergence of duplicate genes in two legume species.两种豆科植物中重复基因的遗传和表观遗传差异。
Plant Cell Environ. 2018 Sep;41(9):2033-2044. doi: 10.1111/pce.13127. Epub 2018 Mar 4.