Department of Biometry and Bioinformatics, Institute of Plant Genetics, Polish Academy of Sciences, 60-479 Poznan, Poland.
Department of Genomics, Institute of Plant Genetics, Polish Academy of Sciences, 60-479 Poznan, Poland.
Int J Mol Sci. 2020 Apr 8;21(7):2580. doi: 10.3390/ijms21072580.
Narrow-leafed lupin ( L.) has recently been supplied with advanced genomic resources and, as such, has become a well-known model for molecular evolutionary studies within the legume family-a group of plants able to fix nitrogen from the atmosphere. The phylogenetic position of lupins in Papilionoideae and their evolutionary distance to other higher plants facilitates the use of this model species to improve our knowledge on genes involved in nitrogen assimilation and primary metabolism, providing novel contributions to our understanding of the evolutionary history of legumes. In this study, we present a complex characterization of two narrow-leafed lupin gene families-glutamine synthetase () and phosphoenolpyruvate carboxylase (). We combine a comparative analysis of gene structures and a synteny-based approach with phylogenetic reconstruction and reconciliation of the gene family and species history in order to examine events underlying the extant diversity of both families. Employing the available evidence, we show the impact of duplications on the initial complement of the analyzed gene families within the genistoid clade and posit that the function of duplicates has been largely retained. In terms of a broader perspective, our results concerning and gene families corroborate earlier findings pointing to key whole genome duplication/triplication event(s) affecting the genistoid lineage.
窄叶羽扇豆(L.)最近获得了先进的基因组资源,因此成为豆科植物分子进化研究的知名模式植物 - 一类能够从大气中固定氮的植物。羽扇豆在 Papilionoideae 中的系统发育位置及其与其他高等植物的进化距离,便于利用该模式物种来提高我们对参与氮同化和初级代谢的基因的认识,为我们理解豆科植物的进化历史提供了新的贡献。在这项研究中,我们对两种窄叶羽扇豆基因家族-谷氨酰胺合成酶(GS)和磷酸烯醇丙酮酸羧激酶(PEPCK)进行了复杂的表征。我们结合基因结构的比较分析和基于基因同线性的方法,以及系统发育重建和基因家族与物种历史的协调,以研究导致这两个家族现存多样性的事件。利用现有证据,我们展示了复制对分析基因家族在金雀花科内初始组成的影响,并假设重复的功能在很大程度上得到了保留。从更广泛的角度来看,我们关于 GS 和 PEPCK 基因家族的结果证实了先前的发现,即影响金雀花科系的全基因组加倍/三倍化事件。