Human Genetics Research Group, School of Biotechnology, Shri Mata Vaishno Devi University, Katra, J&K, 182320, India.
Department of Human Genetics, Guru Nanak Dev University, Amritsar, 143005, Punjab, India.
Sci Rep. 2020 Apr 15;10(1):6444. doi: 10.1038/s41598-020-63510-w.
Telomere length attrition has been implicated in various complex disorders including Type 2 Diabetes (T2D). However, very few candidate gene association studies have been carried out worldwide targeting telomere maintenance genes. In the present study, variants in various critical telomere maintenance pathway genes for T2D susceptibility in Northwest Indian population were explored. With case-control candidate gene association study design, twelve variants from seven telomere maintenance genes were evaluated. Amongst these five variants, rs9419958 (OBFC1), rs4783704 (TERF2), rs16847897 (TERC/LRRC31), rs10936599 (TERC/MYNN), and rs74019828 (CSNK2A2) showed significant association with T2D (at p-value ≤ 0.003, threshold set after Bonferroni correction) in the studied population. In silico analyses of these variants indicated interesting functional roles that warrant experimental validations. Findings showed that variants in telomere maintenance genes are associated with pathogenesis of T2D in Northwest Indian population. We anticipate further, such candidate gene association studies in other Indian populations and worldwide would contribute in understanding the missing heritability of T2D.
端粒长度损耗与多种复杂疾病有关,包括 2 型糖尿病(T2D)。然而,全球范围内针对端粒维持基因的候选基因关联研究非常少。在本研究中,探讨了西北印度人群中与 T2D 易感性相关的各种关键端粒维持途径基因中的变体。采用病例对照候选基因关联研究设计,评估了来自七个端粒维持基因的 12 个变体。在这五个变体中,rs9419958(OBFC1)、rs4783704(TERF2)、rs16847897(TERC/LRRC31)、rs10936599(TERC/MYNN)和 rs74019828(CSNK2A2)与研究人群中的 T2D 显著相关(p 值≤0.003,经 Bonferroni 校正后的阈值)。这些变体的计算机分析表明,它们具有有趣的功能作用,值得进行实验验证。研究结果表明,端粒维持基因中的变体与西北印度人群中 T2D 的发病机制有关。我们预计,在其他印度人群和全球范围内进行的此类候选基因关联研究,将有助于理解 T2D 的遗传缺失。