College of Agriculture, Shihezi University, Shihezi, Xinjiang, China.
College of Life Sciences, Shihezi University, Shihezi, Xinjiang, China.
J Basic Microbiol. 2020 Jun;60(6):517-531. doi: 10.1002/jobm.201900626. Epub 2020 Apr 17.
The effects of soil microbial properties and physiographical factors on safflower distributions in the main safflower plantations of Xinjiang province in China were studied. This study may help determine the basis of the environmental factors for evaluating the geoherbalism of this medicinal plant. The soil microbial biodiversity in the bulk soil and rhizosphere of safflower at different growth stages and from different sampling plots were characterized by analyzing the environmental DNAs in the samples. With general primers targeting the 16S ribosomal DNA for bacteria and the internal transcribed spacer 1 gene for fungi, the study was performed using marker gene amplification coupled with Illumina HiSeq high-throughput sequencing technologies. Correlation analysis and a distance-based redundancy analysis were performed to determine the dominant factors affecting the distribution of the microorganism in safflower soils. A total of 16517 bacterial operational taxonomic units (OTUs) were obtained from all the 108 soil samples of nine safflower sampling plots. At the phylum level, 48 phyla have been identified with Actinobacteria (32.9%) and proteobacteria (28.7%) being predominant. For fungi, 8746 OTUs were obtained, which belonged to seven phyla with Ascomycota overwhelmingly superior in relative abundance. A significant positive correlation was found between soil microbe quantity and ASL (above sea level). Safflower was sensitive to changes in elevation, growing more abundantly in the mountainous regions at heights of around 1,200 m above sea level. It is concluded that the dominant factors affecting the distribution of microorganisms in safflower soils were soil moisture, available N, and ASL.
本研究以中国新疆红花主产区为对象,探讨土壤微生物特性和地形因子对红花分布的影响,旨在为评价该道地药材的环境因子基础提供依据。采用Illumina HiSeq 高通量测序技术,结合通用引物对细菌 16S 核糖体 DNA 和真菌内转录间隔区 1 基因进行标记基因扩增,分析不同生长阶段、不同采样点红花根际和非根际土壤环境 DNA,对土壤微生物生物多样性进行了研究。共获得来自 9 个红花采样点 108 个土壤样品的 16517 个细菌操作分类单元(OTU)。在门水平上,鉴定出 48 个门,其中放线菌(32.9%)和变形菌(28.7%)占优势。对于真菌,共获得 8746 个 OTU,属于 7 个门,其中子囊菌门占有绝对优势。土壤微生物数量与海拔高度(ASL)呈显著正相关。红花对海拔变化敏感,在海拔 1200m 左右的山区生长更为旺盛。研究结果表明,影响红花土壤微生物分布的主导因子是土壤水分、有效氮和 ASL。