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用于检测细胞培养扩增腺病毒的核酸杂交

Nucleic acid hybridization for detection of cell culture-amplified adenovirus.

作者信息

Huang C, Deibel R

机构信息

Wadsworth Center for Laboratories and Research, New York State Department of Health, Albany 12201-0509.

出版信息

J Clin Microbiol. 1988 Dec;26(12):2652-6. doi: 10.1128/jcm.26.12.2652-2656.1988.

DOI:10.1128/jcm.26.12.2652-2656.1988
PMID:3230138
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC266965/
Abstract

A number of recombinant plasmids containing genomic segments of adenovirus were constructed. Seven cloned probes, as well as total adenovirus type 2 (Ad2) and Ad16 genomic DNA, were tested by a nucleic acid hybridization technique for sensitivity and specificity in detecting adenoviruses in infected cells. Adenovirus DNA was spotted onto a nitrocellulose filter and hybridized with 32P-labeled DNA probes. The probes, total Ad2 genomic DNA, and plasmid pAd2-H (containing the hexon gene from Ad2 DNA) all detected 10 reference serotypes of five genomic subgroups (A through E) with similar sensitivities. However, plasmid pAd2-H required less preparation time than did total Ad2 DNA. Probes pAd2-F (containing the fiber gene from Ad2) and pAd16-BD (containing the BamHI D fragment from Ad16) hybridized only with reference serotypes from the homologous subgroups (C and B, respectively). Of 101 patient isolates amplified in cells, pAd2-H detected 100% of all isolates from both the homologous and the heterologous subgroups. The detection rates for pAd2-F were 100% (subgroup C) and 3.6% (subgroups A, B, and D), and those for pAd16-BD were 100% (subgroup B) and 9.4% (subgroups A, C, and D). A commercial biotinylated product (Pathogene II) was also included in this study for comparison.

摘要

构建了许多含有腺病毒基因组片段的重组质粒。通过核酸杂交技术对7种克隆探针以及2型腺病毒(Ad2)和16型腺病毒(Ad16)的基因组DNA进行检测,以评估其在检测感染细胞中腺病毒时的敏感性和特异性。将腺病毒DNA点样到硝酸纤维素滤膜上,与用³²P标记的DNA探针杂交。这些探针、Ad2基因组总DNA以及质粒pAd2-H(含有来自Ad2 DNA的六邻体基因)均能以相似的敏感性检测五个基因组亚群(A至E)的10种参考血清型。然而,与Ad2总DNA相比,质粒pAd2-H所需的制备时间更短。探针pAd2-F(含有来自Ad2的纤维基因)和pAd16-BD(含有来自Ad16的BamHI D片段)仅分别与同源亚群(分别为C和B)的参考血清型杂交。在细胞中扩增的101株患者分离株中,pAd2-H检测到同源和异源亚群的所有分离株的比例均为100%。pAd2-F对C亚群的检测率为100%,对A、B和D亚群的检测率为3.6%;pAd16-BD对B亚群的检测率为100%,对A、C和D亚群的检测率为9.4%。本研究还纳入了一种商业生物素化产品(Pathogene II)进行比较。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923f/266965/f8067e5ce0dc/jcm00084-0203-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923f/266965/9fbd7490cef0/jcm00084-0201-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923f/266965/59d5e5a2533f/jcm00084-0201-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923f/266965/aa3cccd7453f/jcm00084-0202-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923f/266965/f8067e5ce0dc/jcm00084-0203-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923f/266965/9fbd7490cef0/jcm00084-0201-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923f/266965/59d5e5a2533f/jcm00084-0201-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923f/266965/aa3cccd7453f/jcm00084-0202-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923f/266965/f8067e5ce0dc/jcm00084-0203-a.jpg

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引用本文的文献

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本文引用的文献

1
Structure and metabolism of adenovirus RNAs containing sequences from the fiber gene.含有纤维基因序列的腺病毒RNA的结构与代谢
J Mol Biol. 1980 Aug 15;141(3):249-65. doi: 10.1016/0022-2836(80)90180-1.
2
Nucleotide sequence of adenovirus 2 DNA fragment encoding for the carboxylic region of the fiber protein and the entire E4 region.编码纤维蛋白羧基区域和整个E4区域的腺病毒2型DNA片段的核苷酸序列。
Nucleic Acids Res. 1981 Aug 25;9(16):4023-42. doi: 10.1093/nar/9.16.4023.
3
Nucleic acid sandwich hybridization in adenovirus diagnosis.
腺病毒诊断中的核酸夹心杂交
Curr Top Microbiol Immunol. 1983;104:307-18. doi: 10.1007/978-3-642-68949-9_20.
4
A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.一对用于选择双酶切限制片段任一条DNA链的新型M13载体。
Gene. 1982 Oct;19(3):269-76. doi: 10.1016/0378-1119(82)90016-6.
5
The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.pUC质粒,一种源自M13mp7的用于插入诱变和使用合成通用引物进行测序的系统。
Gene. 1982 Oct;19(3):259-68. doi: 10.1016/0378-1119(82)90015-4.
6
Identification of DNA viruses by membrane filter hybridization.通过膜滤杂交法鉴定DNA病毒。
J Clin Microbiol. 1982 Apr;15(4):744-7. doi: 10.1128/jcm.15.4.744-747.1982.
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Nucleotide sequence of the EcoRI E fragment of adenovirus 2 genome.腺病毒2型基因组EcoRI E片段的核苷酸序列。
Nucleic Acids Res. 1981 Mar 11;9(5):1229-40. doi: 10.1093/nar/9.5.1229.
8
Nucleic acid spot hybridization: rapid quantitative screening of lymphoid cell lines for Epstein-Barr viral DNA.核酸斑点杂交:对淋巴样细胞系进行爱泼斯坦-巴尔病毒DNA的快速定量筛选。
Proc Natl Acad Sci U S A. 1980 Nov;77(11):6851-5. doi: 10.1073/pnas.77.11.6851.
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Nucleotide sequence of the EcoRI D fragment of adenovirus 2 genome.腺病毒2型基因组EcoRI D片段的核苷酸序列
Nucleic Acids Res. 1980 May 24;8(10):2173-92. doi: 10.1093/nar/8.10.2173.
10
Isolation of DNA from agarose gels using DEAE-paper. Application to restriction site mapping of adenovirus type 16 DNA.使用二乙氨基乙基(DEAE)纸从琼脂糖凝胶中分离DNA。应用于16型腺病毒DNA的限制酶切位点图谱分析。
Nucleic Acids Res. 1980 Jan 25;8(2):253-64. doi: 10.1093/nar/8.2.253.