Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544, USA.
Division of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Cell. 2020 Apr 16;181(2):306-324.e28. doi: 10.1016/j.cell.2020.03.050.
Liquid-liquid phase separation (LLPS) mediates formation of membraneless condensates such as those associated with RNA processing, but the rules that dictate their assembly, substructure, and coexistence with other liquid-like compartments remain elusive. Here, we address the biophysical mechanism of this multiphase organization using quantitative reconstitution of cytoplasmic stress granules (SGs) with attached P-bodies in human cells. Protein-interaction networks can be viewed as interconnected complexes (nodes) of RNA-binding domains (RBDs), whose integrated RNA-binding capacity determines whether LLPS occurs upon RNA influx. Surprisingly, both RBD-RNA specificity and disordered segments of key proteins are non-essential, but modulate multiphase condensation. Instead, stoichiometry-dependent competition between protein networks for connecting nodes determines SG and P-body composition and miscibility, while competitive binding of unconnected proteins disengages networks and prevents LLPS. Inspired by patchy colloid theory, we propose a general framework by which competing networks give rise to compositionally specific and tunable condensates, while relative linkage between nodes underlies multiphase organization.
液-液相分离(LLPS)介导无膜液滴的形成,如与 RNA 处理相关的液滴,但决定其组装、亚结构以及与其他类似液体隔室共存的规则仍然难以捉摸。在这里,我们使用人细胞中带有 P 体的细胞质应激颗粒(SGs)的定量重构来解决这种多相组织的生物物理机制。蛋白质相互作用网络可以看作是 RNA 结合域(RBD)相互连接的复合物(节点),其整合的 RNA 结合能力决定了在 RNA 流入时是否会发生 LLPS。令人惊讶的是,RBD-RNA 特异性和关键蛋白的无规则片段都不是必需的,但可以调节多相凝聚。相反,连接节点的蛋白质网络之间的化学计量依赖性竞争决定了 SG 和 P 体的组成和混溶性,而未连接的蛋白质的竞争结合会使网络脱离并阻止 LLPS。受斑杂胶体理论的启发,我们提出了一个通用框架,通过该框架,竞争网络产生具有特定组成的可调谐液滴,而节点之间的相对连接则是多相组织的基础。