The Gut Microbes and Health Institute Strategic Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.
Ludger Ltd, Culham Science Centre, Abingdon, OX14 3EB, UK.
Cell Mol Life Sci. 2021 Jan;78(2):675-693. doi: 10.1007/s00018-020-03514-x. Epub 2020 Apr 24.
The availability and repartition of fucosylated glycans within the gastrointestinal tract contributes to the adaptation of gut bacteria species to ecological niches. To access this source of nutrients, gut bacteria encode α-L-fucosidases (fucosidases) which catalyze the hydrolysis of terminal α-L-fucosidic linkages. We determined the substrate and linkage specificities of fucosidases from the human gut symbiont Ruminococcus gnavus. Sequence similarity network identified strain-specific fucosidases in R. gnavus ATCC 29149 and E1 strains that were further validated enzymatically against a range of defined oligosaccharides and glycoconjugates. Using a combination of glycan microarrays, mass spectrometry, isothermal titration calorimetry, crystallographic and saturation transfer difference NMR approaches, we identified a fucosidase with the capacity to recognize sialic acid-terminated fucosylated glycans (sialyl Lewis X/A epitopes) and hydrolyze α1-3/4 fucosyl linkages in these substrates without the need to remove sialic acid. Molecular dynamics simulation and docking showed that 3'-Sialyl Lewis X (sLeX) could be accommodated within the binding site of the enzyme. This specificity may contribute to the adaptation of R. gnavus strains to the infant and adult gut and has potential applications in diagnostic glycomic assays for diabetes and certain cancers.
胃肠道中岩藻糖基化聚糖的存在和分布有助于肠道细菌适应生态位。为了获取这些营养物质,肠道细菌编码α-L-岩藻糖苷酶(岩藻糖苷酶),其催化末端α-L-岩藻糖苷键的水解。我们确定了人类肠道共生菌鲁米诺古球菌 Ruminococcus gnavus 的酶的底物和键特异性。序列相似性网络鉴定了 R. gnavus ATCC 29149 和 E1 菌株中的菌株特异性岩藻糖苷酶,这些酶进一步通过一系列定义的寡糖和糖缀合物的酶学验证进行了验证。通过使用糖基化微阵列、质谱、等温热滴定法、晶体学和饱和转移差异 NMR 方法的组合,我们鉴定了一种具有识别唾液酸化岩藻糖基化聚糖(唾液酸化 Lewis X/A 表位)能力的岩藻糖苷酶,并能够水解这些底物中的α1-3/4 岩藻糖苷键,而无需去除唾液酸。分子动力学模拟和对接表明,3'-唾液酸化 Lewis X(sLeX)可以容纳在酶的结合位点内。这种特异性可能有助于 R. gnavus 菌株适应婴儿和成人肠道,并在用于糖尿病和某些癌症的诊断糖组学测定中具有潜在应用。