具有有限物体支撑的光学衍射层析成像，用于最小化缺失圆锥伪影。
Optical diffraction tomography with finite object support for the minimization of missing cone artifacts.
作者信息
Krauze Wojciech
机构信息
Warsaw University of Technology, Institute of Micromechanics and Photonics, Św. A. Boboli 8 Street, 02-525 Warsaw, Poland.
出版信息
Biomed Opt Express. 2020 Mar 11;11(4):1919-1926. doi: 10.1364/BOE.386507. eCollection 2020 Apr 1.
Abstract
Limited-angle optical diffraction tomography suffers from strong artifacts in tomographic reconstructions. Numerous algorithms, mainly based on regularization methods, have been developed recently to overcome this limitation. However, the quality of results still needs further improvement. Here I present a simple yet extremely effective method of increasing the reconstruction quality in limited angle optical diffraction tomography that can be combined with known tomographic algorithms. In the method a finite object support is generated from the object data and utilized in the reconstruction procedure as an additional strong regularizer. Practical aspects of this method are given together with examples of application.
摘要
有限角度光学衍射层析成像在层析重建中存在严重的伪影。最近已经开发了许多主要基于正则化方法的算法来克服这一限制。然而，结果的质量仍需进一步提高。在此，我提出一种简单但极其有效的方法，可提高有限角度光学衍射层析成像的重建质量，该方法可与已知的层析算法相结合。在该方法中，从物体数据生成有限的物体支撑，并在重建过程中用作额外的强正则化器。本文给出了该方法的实际应用方面以及应用示例。
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本文引用的文献
1
3D-printed biological cell phantom for testing 3D quantitative phase imaging systems.
Sci Rep. 2019 Dec 11;9(1):18872. doi: 10.1038/s41598-019-55330-4.
2
High-fidelity optical diffraction tomography of multiple scattering samples.
Light Sci Appl. 2019 Sep 11;8:82. doi: 10.1038/s41377-019-0195-1. eCollection 2019.
3
Tomographic phase microscopy: principles and applications in bioimaging [Invited].
J Opt Soc Am B. 2017;34(5):B64-B77. doi: 10.1364/josab.34.000b64.
4
Illumination-related errors in limited-angle optical diffraction tomography.
Appl Opt. 2017 Nov 20;56(33):9247-9256. doi: 10.1364/AO.56.009247.
5
Generalized total variation iterative constraint strategy in limited angle optical diffraction tomography.
Opt Express. 2016 Mar 7;24(5):4924-4936. doi: 10.1364/OE.24.004924.
6
Fast and flexible X-ray tomography using the ASTRA toolbox.
Opt Express. 2016 Oct 31;24(22):25129-25147. doi: 10.1364/OE.24.025129.
7
Comparative study of iterative reconstruction algorithms for missing cone problems in optical diffraction tomography.
Opt Express. 2015 Jun 29;23(13):16933-48. doi: 10.1364/OE.23.016933.
8
Deterministic regularization of three-dimensional optical diffraction tomography.
J Opt Soc Am A Opt Image Sci Vis. 2011 Aug 1;28(8):1554-61. doi: 10.1364/JOSAA.28.001554.
9
Deterministic edge-preserving regularization in computed imaging.
IEEE Trans Image Process. 1997;6(2):298-311. doi: 10.1109/83.551699.
10
Random walks for image segmentation.
IEEE Trans Pattern Anal Mach Intell. 2006 Nov;28(11):1768-83. doi: 10.1109/TPAMI.2006.233.
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