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整合分析以阐明糖皮质激素诱导的骨质疏松症的转录组学景观

Integrative Analysis for Elucidating Transcriptomics Landscapes of Glucocorticoid-Induced Osteoporosis.

作者信息

Ying Xiaoxia, Jin Xiyun, Wang Pingping, He Yuzhu, Zhang Haomiao, Ren Xiang, Chai Songling, Fu Wenqi, Zhao Pengcheng, Chen Chen, Ma Guowu, Liu Huiying

机构信息

School of Stomatology, Dalian Medical University, Dalian, China.

School of Life Sciences and Technology, Harbin Institute of Technology, Harbin, China.

出版信息

Front Cell Dev Biol. 2020 Apr 16;8:252. doi: 10.3389/fcell.2020.00252. eCollection 2020.

Abstract

Osteoporosis is the most common bone metabolic disease, characterized by bone mass loss and bone microstructure changes due to unbalanced bone conversion, which increases bone fragility and fracture risk. Glucocorticoids are clinically used to treat a variety of diseases, including inflammation, cancer and autoimmune diseases. However, excess glucocorticoids can cause osteoporosis. Herein we performed an integrated analysis of two glucocorticoid-related microarray datasets. The WGCNA analysis identified 3 and 4 glucocorticoid-related gene modules, respectively. Differential expression analysis revealed 1047 and 844 differentially expressed genes in the two datasets. After integrating differentially expressed glucocorticoid-related genes, we found that most of the robust differentially expressed genes were up-regulated. Through protein-protein interaction analysis, we obtained 158 glucocorticoid-related candidate genes. Enrichment analysis showed that these genes are significantly enriched in the osteoporosis related pathways. Our results provided new insights into glucocorticoid-induced osteoporosis and potential candidate markers of osteoporosis.

摘要

骨质疏松症是最常见的骨代谢疾病,其特征是由于骨转换失衡导致骨量丢失和骨微结构改变,从而增加了骨脆性和骨折风险。糖皮质激素在临床上用于治疗多种疾病,包括炎症、癌症和自身免疫性疾病。然而,过量的糖皮质激素会导致骨质疏松症。在此,我们对两个与糖皮质激素相关的微阵列数据集进行了综合分析。加权基因共表达网络分析(WGCNA)分别鉴定出3个和4个与糖皮质激素相关的基因模块。差异表达分析揭示了两个数据集中分别有1047个和844个差异表达基因。整合与糖皮质激素相关的差异表达基因后,我们发现大多数稳健的差异表达基因是上调的。通过蛋白质-蛋白质相互作用分析,我们获得了158个与糖皮质激素相关的候选基因。富集分析表明,这些基因在骨质疏松症相关途径中显著富集。我们的结果为糖皮质激素诱导的骨质疏松症和潜在的骨质疏松症候选标志物提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5977/7176994/ee286ca434c3/fcell-08-00252-g001.jpg

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