Suppr超能文献

苔藓虫(粘孢子虫寄生虫的主要宿主)的首次转录组分析。

First transcriptome analysis of bryozoan , the primary host of myxozoan parasite .

作者信息

Kumar Gokhlesh, Ertl Reinhard, Bartholomew Jerri L, El-Matbouli Mansour

机构信息

Clinical Division of Fish Medicine, University of Veterinary Medicine Vienna, Vienna, Austria.

VetCore Facility, University of Veterinary Medicine, Vienna, Vienna, Austria.

出版信息

PeerJ. 2020 Apr 28;8:e9027. doi: 10.7717/peerj.9027. eCollection 2020.

Abstract

Bryozoans are aquatic invertebrate moss animals that are found worldwide. is a freshwater bryozoan and is the most common primary host of myxozoan parasite, . However, limited genomic resources are available for this bryozoan, which hampers investigations into the molecular mechanisms of host-parasite interactions. To better understand these interactions, there is a need to build a transcriptome dataset of , for functional genomics analysis by large-scale RNA sequencing. Total RNA was extracted from zooids of cultivated under controlled laboratory conditions. cDNA libraries were prepared and were analyzed by the Illumina paired-ends sequencing. The sequencing data were used for de novo transcriptome assembly and functional annotation. Approximately 118 million clean reads were obtained, and assembled into 85,544 contigs with an average length of 852 bp, an N50 of 1,085 bp, and an average GC content 51.4%. A total of 23,978 (28%) contigs were annotated using BLASTX analysis. Of these transcripts, 4,400 contigs had highest similarity to brachiopod species . Based on Gene ontology (GO) annotation, the most highly scored categories of biological process were categorized into cellular process (27%), metabolic process (24%), and biological regulation (8%) in the transcriptome of . This study gives first insights into the transcriptome of and provides comprehensive genetic resources for the species. We believe that the transcriptome of will serve as a useful genomic dataset to accelerate research of functional genomics and will help facilitate whole genome sequencing and annotation. Candidate genes potentially involved in growth, proteolysis, and stress/immunity-response were identified, and are worthy of further investigation.

摘要

苔藓虫是一种水生无脊椎动物苔藓动物,在世界各地都有发现。 是一种淡水苔藓虫,是粘孢子虫寄生虫 的最常见主要宿主。然而,这种苔藓虫的基因组资源有限,这阻碍了对宿主 - 寄生虫相互作用分子机制的研究。为了更好地理解这些相互作用,需要构建 的转录组数据集,以便通过大规模RNA测序进行功能基因组学分析。在实验室控制条件下培养的苔藓虫个体中提取总RNA。制备cDNA文库并通过Illumina双末端测序进行分析。测序数据用于从头转录组组装和功能注释。获得了约1.18亿条clean reads,并组装成85,544个contigs,平均长度为852 bp,N50为1,085 bp,平均GC含量为51.4%。使用BLASTX分析对总共23,978个(28%)contigs进行了注释。在这些转录本中,4,400个contigs与腕足动物物种 的相似度最高。基于基因本体(GO)注释,在 的转录组中,生物学过程得分最高的类别被分类为细胞过程(27%)、代谢过程(24%)和生物调节(8%)。本研究首次深入了解了 的转录组,并为该物种提供了全面的遗传资源。我们相信, 的转录组将作为一个有用的基因组数据集,以加速功能基因组学的研究,并将有助于促进全基因组测序和注释。鉴定出了可能参与生长、蛋白水解以及应激/免疫反应的候选基因,值得进一步研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c546/7194087/48f75e837d88/peerj-08-9027-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验