Laboratory of Chemical Physics, National Institutes of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0520, USA.
Chemphyschem. 2020 Jun 16;21(12):1224-1229. doi: 10.1002/cphc.202000312. Epub 2020 May 20.
Double electron-electron resonance (DEER) EPR spectroscopy is a powerful method for obtaining distance distributions between pairs of engineered nitroxide spin-labels in proteins and other biological macromolecules. These measurements require the use of cryogenic temperatures (77 K or less) to prolong the phase memory relaxation time (T ) sufficiently to enable detection of a DEER echo curve. Generally, a cryoprotectant such as glycerol is added to protein samples to facilitate glass formation and avoid protein clustering (which can result in a large decrease in T ) during relatively slow flash freezing in liquid N . However, cryoprotectants are osmolytes and can influence protein folding/unfolding equilibria, as well as species populations in weak multimeric systems. Here we show that submillisecond rapid freezing, achieved by high velocity spraying of the sample onto a rapidly spinning, liquid nitrogen cooled copper disc obviates the requirement for cryoprotectants and permits high quality DEER data to be obtained in absence of glycerol. We demonstrate this approach on five different protein systems: protein A, the metastable drkN SH3 domain, urea-unfolded drkN SH3, HIV-1 reverse transcriptase, and the transmembrane domain of HIV-1 gp41 in lipid bicelles.
双电子-电子共振(DEER)电子顺磁共振波谱是一种强大的方法,可用于获取蛋白质和其他生物大分子中工程化氮氧自由基自旋标记对之间的距离分布。这些测量需要使用低温(77 K 或更低)来延长相位记忆弛豫时间(T),以充分检测 DEER 回波曲线。通常,在相对缓慢的液氮中快速冷冻时,向蛋白质样品中添加防冻剂(如甘油)以促进玻璃形成并避免蛋白质聚集(这可能导致 T 大幅下降)。然而,防冻剂是渗透剂,会影响蛋白质折叠/去折叠平衡,以及弱多聚体系统中的物种群体。在这里,我们表明,通过将样品高速喷射到快速旋转的液氮冷却铜盘上,可以实现亚毫秒级快速冷冻,从而无需使用防冻剂,并可以在没有甘油的情况下获得高质量的 DEER 数据。我们在五个不同的蛋白质系统上证明了这种方法:蛋白 A、亚稳定 drkN SH3 结构域、尿素变性 drkN SH3、HIV-1 逆转录酶和 HIV-1 gp41 跨膜结构域在脂质双层中。