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基于风险相关单核苷酸多态性的遗传风险评分能够揭示中国人群膀胱癌的遗传风险。

Genetic risk scores based on risk-associated single nucleotide polymorphisms can reveal inherited risk of bladder cancer in Chinese population.

作者信息

Xu Chenyang, Lin Xiaoling, Qian Wei, Na Rong, Yu Hongjie, Jia Haifei, Jiang Haowen, Fang Zujun, Zheng S Lilly, Ding Qiang, Wu Yishuo, Zheng Jie, Xu Jianfeng

机构信息

Department of Urology.

Fudan Institute of Urology, Huashan Hospital, Fudan University, Shanghai, PR China.

出版信息

Medicine (Baltimore). 2020 May;99(19):e19980. doi: 10.1097/MD.0000000000019980.

Abstract

Genome-wide association studies have identified single nucleotide polymorphisms (SNPs) associated with bladder cancer (BCa) risk in Caucasian and East Asian population. The objective of this study was to validate these SNPs in Chinese population and evaluate whether these SNPs could differentiate the individual inherited risk for BCa.A case-control study including 581 BCa cases and 1561 healthy controls was performed. Germline DNA samples from all individuals were genotyped for eight SNPs. Genetic risk score (GRS) was calculated for each individual based on the odds ratios and risk allele frequencies of five risk-associated SNPs.Among eight SNPs evaluated in this study, rs798766 at 4p16.3 [OR = 1.39 (1.15-1.67), P < .001], rs9642880 [OR = 1.17 (1.06-1.30), P < .001] and rs4813953 at 20p12.2 [OR = 1.09 (1.02-1.17), P = .016] were found associated with BCa risk in Chinese population. A genetic risk score was established based on five SNPs (including the above three SNPs and two other SNPs which have the consistent direction with previous reported genome-wide association study). The mean GRS was significantly higher in BCa cases than controls (1.22 vs. 1.01, P < .001). When subjects were categorized into low- (<0.8), average- (0.8-1.2), and high-risk (>1.2) groups, the likelihoods of BCa were 25.2%, 33.7% and 55.0%, respectively (P-trend < 2.2 × 10). In subgroup analyses, no significant difference was observed in mean GRS among BCa patients with different stages or grades.In conclusion, two SNPs derived from East Asian and one SNP from Caucasian were associated with BCa risk in Chinese population. These results provided additional information of genetic risks for BCa in Chinese population. Genetic risk score based on these SNPs can reveal inherited risk of BCa, and may have potential for modifying personalized cancer screening strategy.

摘要

全基因组关联研究已经在白种人和东亚人群中鉴定出与膀胱癌(BCa)风险相关的单核苷酸多态性(SNP)。本研究的目的是在中国人群中验证这些SNP,并评估这些SNP是否能够区分个体患BCa的遗传风险。进行了一项病例对照研究,包括581例BCa病例和1561例健康对照。对所有个体的生殖系DNA样本进行8个SNP的基因分型。根据5个风险相关SNP的比值比和风险等位基因频率为每个个体计算遗传风险评分(GRS)。在本研究评估的8个SNP中,4p16.3处的rs798766[比值比=1.39(1.15 - 1.67),P<0.001]、rs9642880[比值比=1.17(1.06 - 1.30),P<0.001]和20p12.2处的rs4813953[比值比=1.09(1.02 - 1.17),P = 0.016]被发现与中国人群的BCa风险相关。基于5个SNP(包括上述3个SNP以及另外2个与先前报道的全基因组关联研究方向一致的SNP)建立了遗传风险评分。BCa病例的平均GRS显著高于对照组(1.22对1.01,P<0.001)。当将受试者分为低风险(<0.8)、中等风险(0.8 - 1.2)和高风险(>1.2)组时,患BCa的可能性分别为25.2%、33.7%和55.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a45/7220229/8f7b895079f1/medi-99-e19980-g004.jpg

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