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HSPB8是一种潜在的预后生物标志物,与膀胱癌中的免疫细胞浸润相关。

HSPB8 is a Potential Prognostic Biomarker that Correlates With Immune Cell Infiltration in Bladder Cancer.

作者信息

Tan Zhiyong, Fu Shi, Huang Yinglong, Duan Xianzhong, Zuo Yigang, Zhu Xiaorui, Wang Haifeng, Wang Jiansong

机构信息

Department of Urology, the Second Affiliated Hospital of Kunming Medical University, Yunnan Institute of Urology, Kunming, China.

Department of Urology, the Second People's Hospital of Baoshan, Baoshan, China.

出版信息

Front Genet. 2022 Mar 7;13:804858. doi: 10.3389/fgene.2022.804858. eCollection 2022.

Abstract

Heat shock protein B8 (HSPB8) is expressed in various cancers. However, the functional and clinicopathological significance of HSPB8 expression in bladder cancer (BC) remains unclear. The present study sought to elucidate the clinicopathological features and prognostic value of HSPB8 in BC. A BC RNA-seq data set was obtained from The Cancer Genome Atlas Urothelial Bladder Carcinoma (TCGA-BLCA) database, and the external validation dataset GSE130598 was downloaded from the GEO database. Samples in the TCGA-BLCA were categorized into two groups based on HSPB8 expression. Differentially expressed genes (DEGs) between the two groups were defined as HSPB8 co-expressed genes. Gene set enrichment analysis (GSEA), protein-protein interaction networks, and mRNA-microRNA (miRNA) interaction networks were generated to predict the function and interactions of genes that are co-expressed with HSPB8. Finally, we examined immune cell infiltration and constructed a survival prediction model for BC patients. The expression level of HSBP8 has a significant difference between cancer samples and normal samples, and its diagnosis effect was validated by the ROC curve. 446 differential expressed genes between HSBP8 high-expression and HSBP8 low expression groups were identified. Gene enrichment analysis and GSEA analysis show that these differential gene functions are closely related to the occurrence and development of BC and the metabolic pathways of BC. The cancer-related pathways included Cytokine-cytokine receptor Interaction, Focal adhesion, and Proteoglycans in cancer. PPI and protein-coding gene-miRNA network visualized the landscape for these tightly bounded gene interactions. Immune cell infiltration shows that B cells, CD4+T cells, and CD8+T cells have strongly different infiltration levels between the HSBP8 high exp group and low exp group. The survival prediction model shows that HSBP8 has strong prognosis power in the BLCA cohort. Identifying DEGs may enhance understanding of BC development's causes and molecular mechanisms. HSPB8 may play an essential role in BC progression and prognosis and serve as a potential biomarker for BC treatment.

摘要

热休克蛋白B8(HSPB8)在多种癌症中均有表达。然而,HSPB8在膀胱癌(BC)中的功能及临床病理意义仍不清楚。本研究旨在阐明HSPB8在BC中的临床病理特征及预后价值。从癌症基因组图谱尿路上皮膀胱癌(TCGA - BLCA)数据库中获取BC RNA测序数据集,并从GEO数据库下载外部验证数据集GSE130598。根据HSPB8表达情况将TCGA - BLCA中的样本分为两组。将两组之间的差异表达基因(DEGs)定义为与HSPB8共表达的基因。生成基因集富集分析(GSEA)、蛋白质 - 蛋白质相互作用网络和mRNA - 微小RNA(miRNA)相互作用网络,以预测与HSPB8共表达的基因的功能及相互作用。最后,我们检测了免疫细胞浸润情况,并构建了BC患者的生存预测模型。HSBP8的表达水平在癌组织样本和正常样本之间存在显著差异,其诊断效果通过ROC曲线得到验证。在HSBP8高表达组和低表达组之间鉴定出446个差异表达基因。基因富集分析和GSEA分析表明,这些差异基因的功能与BC的发生发展以及BC的代谢途径密切相关。癌症相关途径包括细胞因子 - 细胞因子受体相互作用、粘着斑和癌症中的蛋白聚糖。蛋白质 - 蛋白质相互作用(PPI)和蛋白质编码基因 - miRNA网络直观展示了这些紧密相连的基因相互作用情况。免疫细胞浸润显示,HSBP8高表达组和低表达组之间B细胞、CD4 + T细胞和CD8 + T细胞的浸润水平存在显著差异。生存预测模型显示,HSPB8在BLCA队列中具有强大的预后预测能力。鉴定差异表达基因可能会增强对BC发生原因和分子机制的理解。HSPB8可能在BC进展和预后中发挥重要作用,并可作为BC治疗的潜在生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0b4/8940282/99ca86349ac4/fgene-13-804858-g001.jpg

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