Faculty of Pharmaceutical Sciences, Suzuka University of Medical Science, Suzuka, Mie, Japan.
Institute of Natural Medicine, University of Toyama, Toyama, Japan.
Appl Environ Microbiol. 2020 Jul 2;86(14). doi: 10.1128/AEM.00607-20.
A human intestinal bacterium strain related to species, PUE, can metabolize the isoflavone -glucoside puerarin (daidzein 8--glucoside) to daidzein and glucose. We reported previously that 3″-oxo-puerarin is an essential reaction intermediate in enzymatic puerarin degradation, and we characterized a bacterial enzyme, the DgpB-DgpC complex, that cleaved the -glycosidic bond in 3″-oxo-puerarin. However, the exact enzyme catalyzing the oxidation of the C-3″ hydroxyl in puerarin has not been identified. In this study, we demonstrated that recombinant DgpA, a Gfo/Idh/MocA family oxidoreductase, catalyzed puerarin oxidation in the presence of 3-oxo-glucose as the hydride acceptor. In the redox reaction, NAD(H) functioned as the cofactor, which bound tightly but noncovalently to DgpA. Kinetics analysis of DgpA revealed that the reaction proceeded via a ping-pong mechanism. Enzymatic -deglycosylation of puerarin was achieved by a combination of recombinant DgpA, the DgpB-DgpC complex, and 3-oxo-glucose. In addition, the metabolite derived from the sugar moiety in the 3″-oxo-puerarin-cleaving reaction catalyzed by the DgpB-DgpC complex was characterized as 1,5-anhydro-d--hex-1-en-3-ulose, suggesting that the -glycosidic linkage is cleaved through a β-elimination-like mechanism. One important role of the gut microbiota is to metabolize dietary nutrients and supplements such as flavonoid glycosides. Ingested glycosides are metabolized by intestinal bacteria to more-absorbable aglycones and further degradation products that show beneficial effects in humans. Although numerous glycoside hydrolases that catalyze -deglycosylation have been reported, enzymes responsible for -deglycosylation are still limited. In this study, we characterized enzymes involved in the -deglycosylation of puerarin from a human intestinal bacterium, PUE. Here, we report the purification and characterization of a recombinant oxidoreductase involved in -glucoside degradation. This study provides new insights for the elucidation of mechanisms of enzymatic -deglycosylation.
一种与 种相关的人肠道细菌菌株 PUE 可以将异黄酮糖苷葛根素(大豆苷元 8--葡萄糖苷)代谢为大豆苷元和葡萄糖。我们之前曾报道过 3″-氧代葛根素是酶促葛根素降解的必需反应中间体,并且我们表征了一种细菌酶,即 DgpB-DgpC 复合物,该酶可在 3″-氧代葛根素中裂解 -糖苷键。然而,尚未鉴定出确切的催化葛根素中 C-3″羟基氧化的酶。在这项研究中,我们证明了重组 DgpA,一种 Gfo/Idh/MocA 家族氧化还原酶,在 3-氧代葡萄糖作为氢供体的存在下催化葛根素氧化。在氧化还原反应中,NAD(H) 作为辅因子起作用,它与 DgpA 紧密但非共价结合。DgpA 的动力学分析表明,该反应通过乒乓机制进行。葛根素的酶促 -去糖基化是通过重组 DgpA、DgpB-DgpC 复合物和 3-氧代葡萄糖的组合来实现的。此外,由 DgpB-DgpC 复合物催化的 3″-氧代葛根素裂解反应中糖部分衍生的代谢物被表征为 1,5-脱水-d--己-1-烯-3-ulose,表明 -糖苷键通过类似 β-消除的机制被裂解。肠道微生物群的一个重要作用是代谢饮食营养素和补充剂,如类黄酮糖苷。肠道细菌将摄入的糖苷代谢为更易吸收的苷元和进一步降解产物,这些产物在人类中表现出有益的作用。尽管已经报道了许多催化 -去糖基化的糖苷水解酶,但负责 -去糖基化的酶仍然有限。在这项研究中,我们从人肠道细菌 PUE 中表征了参与葛根素 -去糖基化的酶。在这里,我们报告了参与 -葡萄糖苷降解的重组氧化还原酶的纯化和表征。这项研究为阐明酶促 -去糖基化的机制提供了新的见解。