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肺发育基因与成人肺功能

Lung Development Genes and Adult Lung Function.

机构信息

National Heart and Lung Institute, Imperial College London, London, United Kingdom.

Congenica Ltd., Wellcome Genome Campus, Cambridge, United Kingdom.

出版信息

Am J Respir Crit Care Med. 2020 Sep 15;202(6):853-865. doi: 10.1164/rccm.201912-2338OC.

DOI:10.1164/rccm.201912-2338OC
PMID:32392078
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7491406/
Abstract

Poor lung health in adult life may occur partly through suboptimal growth and development, as suggested by epidemiological evidence pointing to early life risk factors. To systematically investigate the effects of lung development genes on adult lung function. Using UK Biobank data, we tested the association of 391 genes known to influence lung development with FVC and FEV/FVC. We split the dataset into two random subsets of 207,616 and 138,411 individuals, using the larger subset to select the most promising signals and the smaller subset for replication. We identified 55 genes, of which 36 (16 for FVC, 19 for FEV/FVC, and one for both) had not been identified in the largest, most recent genome-wide study of lung function. Most of these 36 signals were intronic variants; expression data from blood and lung tissue showed that the majority affect the expression of the genes they lie within. Further testing of 34 of these 36 signals in the CHARGE and SpiroMeta consortia showed that 16 replicated after Bonferroni correction and another 12 replicated at nominal significance level. Of the 55 genes, 53 fell into four biological categories whose function is to regulate organ size and cell integrity (growth factors; transcriptional regulators; cell-to-cell adhesion; extracellular matrix), suggesting that these specific processes are important for adult lung health. Our study demonstrates the importance of lung development genes in regulating adult lung function and influencing both restrictive and obstructive patterns. Further investigation of these developmental pathways could lead to druggable targets.

摘要

成人肺部健康状况不佳可能部分是由于生长和发育不理想所致,这一点可以从指向生命早期危险因素的流行病学证据中得到证明。为了系统地研究肺部发育基因对成人肺功能的影响。我们使用英国生物库(UK Biobank)的数据,测试了 391 个已知影响肺部发育的基因与 FVC 和 FEV/FVC 的相关性。我们将数据集分为两个随机子集,每个子集包含 207616 人和 138411 人,使用较大的子集选择最有前途的信号,使用较小的子集进行复制。我们确定了 55 个基因,其中 36 个(16 个与 FVC 相关,19 个与 FEV/FVC 相关,一个与两者都相关)在最大、最近的肺功能全基因组研究中尚未发现。这 36 个信号中的大多数是内含子变体;血液和肺部组织的表达数据表明,它们大多数会影响它们所在基因的表达。在 CHARGE 和 SpiroMeta 联盟中对这 36 个信号中的 34 个进行进一步测试后,发现有 16 个在 Bonferroni 校正后得到复制,另外 12 个在名义显著水平上得到复制。在这 55 个基因中,有 53 个属于四个生物学类别,其功能是调节器官大小和细胞完整性(生长因子;转录调节因子;细胞间黏附;细胞外基质),这表明这些特定的过程对成人肺部健康非常重要。我们的研究表明,肺部发育基因在调节成人肺功能以及影响限制性和阻塞性模式方面具有重要意义。对这些发育途径的进一步研究可能会导致可药物治疗的靶点。

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