从东北太平洋热液羽流中分离出的梅里迪亚纳嗜盐菌Eplume2菌株的全基因组序列
Complete Genome Sequence of Halomonas meridiana Strain Eplume2, Isolated from a Hydrothermal Plume in the Northeast Pacific Ocean.
作者信息
Kurihara Yu, Kawai Shingo, Sakai Ayano, Galipon Josephine, Arakawa Kazuharu
机构信息
Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan.
Faculty of Policy Management, Keio University, Fujisawa, Japan.
出版信息
Microbiol Resour Announc. 2020 May 14;9(20):e00330-20. doi: 10.1128/MRA.00330-20.
Abstract
strain Eplume2 (ATCC BAA-804) is a Gram-negative bacterium isolated from hydrothermal plume seawater in the Northeast Pacific Ocean at a depth of 2,000 m. Here, we report the complete genome sequence of this strain, which has a total size of 4.12 Mbp and a 56.6% G+C content.
摘要
埃普卢姆2菌株（ATCC BAA - 804）是一种革兰氏阴性菌，从东北太平洋2000米深处的热液羽流海水中分离得到。在此，我们报告该菌株的完整基因组序列，其总大小为4120000碱基对，G+C含量为56.6%。
相似文献
1
Complete Genome Sequence of Halomonas meridiana Strain Eplume2, Isolated from a Hydrothermal Plume in the Northeast Pacific Ocean.从东北太平洋热液羽流中分离出的梅里迪亚纳嗜盐菌Eplume2菌株的全基因组序列
Microbiol Resour Announc. 2020 May 14;9(20):e00330-20. doi: 10.1128/MRA.00330-20.
2
Halomonas neptunia sp. nov., Halomonas sulfidaeris sp. nov., Halomonas axialensis sp. nov. and Halomonas hydrothermalis sp. nov.: halophilic bacteria isolated from deep-sea hydrothermal-vent environments.海王星盐单胞菌新种、硫化物盐单胞菌新种、轴栖盐单胞菌新种和热液盐单胞菌新种：从深海热液喷口环境中分离出的嗜盐细菌。
Int J Syst Evol Microbiol. 2004 Mar;54(Pt 2):499-511. doi: 10.1099/ijs.0.02799-0.
3
Complete Genome Sequence of Halomonas meridiana Strain Slthf1, Isolated from a Deep-Sea Thermal Vent.从深海热液喷口分离的嗜盐嗜碱菌Slthf1菌株的全基因组序列
Microbiol Resour Announc. 2020 Apr 16;9(16):e00292-20. doi: 10.1128/MRA.00292-20.
4
Complete Genome Sequence of Halomonas hydrothermalis Strain Slthf2, a Halophilic Bacterium Isolated from a Deep-Sea Hydrothermal-Vent Environment.嗜盐细菌嗜热栖热单胞菌菌株Slthf2的全基因组序列，该菌株从深海热液喷口环境中分离得到
Microbiol Resour Announc. 2020 Apr 9;9(15):e00294-20. doi: 10.1128/MRA.00294-20.
5
sp. nov., a multiple-stress-tolerant bacterium isolated from a deep-sea sediment sample of the New Britain Trench.sp. nov.，一种从新不列颠海沟深海沉积物样本中分离出来的多压力耐受细菌。
Int J Syst Evol Microbiol. 2020 Apr;70(4):2560-2568. doi: 10.1099/ijsem.0.004069. Epub 2020 Mar 4.
6
Complete Genome Sequence of Halomonas sulfidaeris Strain Esulfide1 Isolated from a Metal Sulfide Rock at a Depth of 2,200 Meters, Obtained Using Nanopore Sequencing.从2200米深处的金属硫化物岩石中分离出的嗜硫嗜盐菌菌株Esulfide1的全基因组序列，采用纳米孔测序获得。
Microbiol Resour Announc. 2019 Jun 6;8(23):e00327-19. doi: 10.1128/MRA.00327-19.
7
Halomonas titanicae sp. nov., a halophilic bacterium isolated from the RMS Titanic.泰坦尼克海杆菌，一种从 RMS 泰坦尼克号上分离得到的嗜盐细菌。
Int J Syst Evol Microbiol. 2010 Dec;60(Pt 12):2768-2774. doi: 10.1099/ijs.0.020628-0. Epub 2010 Jan 8.
8
Complete genome analysis of Sulfobacillus acidophilus strain TPY, isolated from a hydrothermal vent in the Pacific Ocean.嗜酸硫杆菌 TPY 菌株的全基因组分析，该菌株分离自太平洋的一处热液喷口。
J Bacteriol. 2011 Oct;193(19):5555-6. doi: 10.1128/JB.05684-11.
9
Halomonas boliviensis sp. nov., an alkalitolerant, moderate halophile isolated from soil around a Bolivian hypersaline lake.玻利维亚盐单胞菌新种，一种从玻利维亚高盐湖周边土壤中分离出的耐碱中度嗜盐菌。
Int J Syst Evol Microbiol. 2004 May;54(Pt 3):721-725. doi: 10.1099/ijs.0.02800-0.
10
Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata.从加勒比鹿角珊瑚（Acropora palmata）表面微生物群中分离出的嗜盐嗜碱菌（Halomonas meridiana）R1t3的基因组序列草图
Stand Genomic Sci. 2015 Oct 7;10:75. doi: 10.1186/s40793-015-0069-y. eCollection 2015.
引用本文的文献
1
Overview of Genomic Island 1-Related Elements Among Gamma-Proteobacteria Reveals Their Wide Distribution Among Environmental Species.γ-变形菌纲中与基因组岛1相关元件的概述揭示了它们在环境物种中的广泛分布。
Front Microbiol. 2022 Apr 11;13:857492. doi: 10.3389/fmicb.2022.857492. eCollection 2022.
本文引用的文献
1
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.DFAST：一个灵活的原核生物基因组注释管道，用于更快地发布基因组。
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
2
gVolante for standardizing completeness assessment of genome and transcriptome assemblies.gVolante 用于标准化基因组和转录组组装的完整性评估。
Bioinformatics. 2017 Nov 15;33(22):3635-3637. doi: 10.1093/bioinformatics/btx445.
3
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
4
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO：利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
5
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
6
Industrial and environmental applications of halophilic microorganisms.嗜盐微生物的工业和环境应用。
Environ Technol. 2010 Jul-Aug;31(8-9):825-34. doi: 10.1080/09593330903370026.
7
Fast and accurate long-read alignment with Burrows-Wheeler transform.基于 Burrows-Wheeler 变换的快速准确长读比对。
Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15.
8
Halomonas neptunia sp. nov., Halomonas sulfidaeris sp. nov., Halomonas axialensis sp. nov. and Halomonas hydrothermalis sp. nov.: halophilic bacteria isolated from deep-sea hydrothermal-vent environments.海王星盐单胞菌新种、硫化物盐单胞菌新种、轴栖盐单胞菌新种和热液盐单胞菌新种：从深海热液喷口环境中分离出的嗜盐细菌。
Int J Syst Evol Microbiol. 2004 Mar;54(Pt 2):499-511. doi: 10.1099/ijs.0.02799-0.
9
Potential of halotolerant and halophilic microorganisms for biotechnology.耐盐和嗜盐微生物在生物技术中的潜力。
Extremophiles. 2001 Apr;5(2):73-83. doi: 10.1007/s007920100184.
10
Alkaline detergent enzymes from alkaliphiles: enzymatic properties, genetics, and structures.嗜碱菌产生的碱性洗涤剂酶：酶学性质、遗传学及结构
Extremophiles. 1998 Aug;2(3):185-90. doi: 10.1007/s007920050059.
Zotero 插件