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从女性尿道分离出的科伊尔棒状杆菌UMB8490的基因组序列草图

Draft Genome Sequence of Corynebacterium coyleae UMB8490, Isolated from the Female Urinary Tract.

作者信息

Ali Khan Abbas, Miller-Ensminger Taylor, Voukadinova Adelina, Wolfe Alan J, Putonti Catherine

机构信息

Department of Biology, Loyola University Chicago, Chicago, Illinois, USA.

Bioinformatics Program, Loyola University Chicago, Chicago, Illinois, USA.

出版信息

Microbiol Resour Announc. 2020 May 14;9(20):e00393-20. doi: 10.1128/MRA.00393-20.

DOI:10.1128/MRA.00393-20
PMID:32409550
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7225549/
Abstract

Here, we present the draft genome sequence for UMB8490, isolated from the catheterized urine of a female with overactive bladder symptoms. The size of the genome is 2,483,223 bp assembled in 62 contigs with an observed GC content of 61.42%.

摘要

在此，我们展示了从一名患有膀胱过度活动症症状的女性导尿尿液中分离出的UMB8490的基因组序列草图。该基因组大小为2,483,223 bp，由62个重叠群组装而成，观察到的GC含量为61.42%。

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本文引用的文献

1
Corynebacterium coyleae as potential urinary tract pathogen.科氏棒杆菌可能成为泌尿道病原体。
Eur J Clin Microbiol Infect Dis. 2019 Jul;38(7):1339-1342. doi: 10.1007/s10096-019-03565-4. Epub 2019 Apr 27.
2
Total nephrectomy following urinary tract infection.尿路感染后行全肾切除术。
JMM Case Rep. 2018 Apr 6;5(9):e005149. doi: 10.1099/jmmcr.0.005149. eCollection 2018 Sep.
3
A Systematic Review of Single-Dose Aminoglycoside Therapy for Urinary Tract Infection: Is It Time To Resurrect an Old Strategy?单剂氨基糖苷类药物治疗尿路感染的系统评价：是否是重新采用旧策略的时候了？
Antimicrob Agents Chemother. 2018 Dec 21;63(1). doi: 10.1128/AAC.02165-18. Print 2019 Jan.
4
Microorganisms Identified in the Maternal Bladder: Discovery of the Maternal Bladder Microbiota.在母体膀胱中鉴定出的微生物：母体膀胱微生物群的发现。
AJP Rep. 2017 Jul;7(3):e188-e196. doi: 10.1055/s-0037-1606860. Epub 2017 Sep 29.
5
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.全细菌生物信息学数据库与分析资源中心PATRIC的改进。
Nucleic Acids Res. 2017 Jan 4;45(D1):D535-D542. doi: 10.1093/nar/gkw1017. Epub 2016 Nov 29.
6
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
8
The female urinary microbiome: a comparison of women with and without urgency urinary incontinence.女性泌尿微生物群：有和没有急迫性尿失禁的女性的比较。
mBio. 2014 Jul 8;5(4):e01283-14. doi: 10.1128/mBio.01283-14.
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Urine is not sterile: use of enhanced urine culture techniques to detect resident bacterial flora in the adult female bladder.尿液并非无菌：采用强化尿液培养技术检测成年女性膀胱中的常驻细菌菌群。
J Clin Microbiol. 2014 Mar;52(3):871-6. doi: 10.1128/JCM.02876-13. Epub 2013 Dec 26.
10
Identification of acquired antimicrobial resistance genes.获得性抗菌耐药基因的鉴定。
J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10.