University of California Davis, Department of Earth and Planetary Sciences, Davis, CA, USA.
University of California Davis Genome Center, Davis, CA, USA.
ISME J. 2020 Aug;14(8):2142-2152. doi: 10.1038/s41396-020-0668-5. Epub 2020 May 18.
Clues to the evolutionary steps producing innovations in oxygenic photosynthesis may be preserved in the genomes of organisms phylogenetically placed between non-photosynthetic Vampirovibrionia (formerly Melainabacteria) and the thylakoid-containing Cyanobacteria. However, only two species with published genomes are known to occupy this phylogenetic space, both within the genus Gloeobacter. Here, we describe nearly complete, metagenome-assembled genomes (MAGs) of an uncultured organism phylogenetically placed near Gloeobacter, for which we propose the name Candidatus Aurora vandensis {Au'ro.ra. L. fem. n. aurora, the goddess of the dawn in Roman mythology; van.de'nsis. N.L. fem. adj. vandensis of Lake Vanda, Antarctica}. The MAG of A. vandensis contains homologs of most genes necessary for oxygenic photosynthesis including key reaction center proteins. Many accessory subunits associated with the photosystems in other species either are missing from the MAG or are poorly conserved. The MAG also lacks homologs of genes associated with the pigments phycocyanoerethrin, phycoeretherin and several structural parts of the phycobilisome. Additional characterization of this organism is expected to inform models of the evolution of oxygenic photosynthesis.
产生含氧光合作用创新的进化步骤的线索可能保存在从非光合作用 Vampirovibrionia(以前称为 Melainabacteria)到含类囊体的蓝细菌的系统发育上放置的生物体的基因组中。然而,已知只有两种具有已发表基因组的物种占据了这个系统发育空间,都属于 Gloeobacter 属。在这里,我们描述了一个未培养的生物体的近乎完整的宏基因组组装基因组(MAG),该生物体在系统发育上与 Gloeobacter 接近,我们为此提议将其命名为 Candidatus Aurora vandensis {Au'ro.ra. L. fem. n. aurora,罗马神话中黎明女神;van.de'nsis. N.L. fem. adj. vandensis 来自南极洲的万迪湖}。A. vandensis 的 MAG 包含大多数有氧光合作用所必需的基因的同源物,包括关键的反应中心蛋白。其他物种中与光合作用体相关的许多辅助亚基要么从 MAG 中缺失,要么保存不佳。MAG 也缺乏与藻胆素色氨酸、藻胆红素和藻胆体几个结构部分相关的基因的同源物。对该生物体的进一步表征有望为含氧光合作用的进化模型提供信息。