Department of Earth and Planetary Sciences, University of California Davis, Davis, California, USA.
mSphere. 2021 Aug 25;6(4):e0006121. doi: 10.1128/mSphere.00061-21. Epub 2021 Jul 21.
Photosynthetic and their descendants are the only known organisms capable of oxygenic photosynthesis. Their metabolism permanently changed the Earth's surface and the evolutionary trajectory of life, but little is known about their evolutionary history. Genomes of the , an order of deeply divergent photosynthetic , may hold clues about the evolutionary process. However, there are only three published genomes within this order, and it is difficult to make broad inferences based on such little data. Here, I describe five species within the retrieved from publicly available databases and examine their photosynthetic gene content and the environments in which genomes and 16S rRNA gene sequences are found. The contain reduced photosystems and inhabit cold, wet-rock, and low-light environments. They are likely present in low abundances due to their low growth rate. Future searches for should target these environments, and samples should be deeply sequenced to capture the low-abundance taxa. Publicly available databases contain undescribed taxa within the . However, searching through all available data with current methods is computationally expensive. Therefore, new methods must be developed to search for these and other evolutionarily important taxa. Once identified, these novel photosynthetic will help illuminate the origin and evolution of oxygenic photosynthesis. Early branching photosynthetic such as the may provide clues into the evolutionary history of oxygenic photosynthesis, but there are few genomes or cultured taxa from this order. Five new metagenome-assembled genomes suggest that members of the all contain reduced photosystems and lack genes associated with thylakoids and circadian rhythms. Their distribution suggests that they may thrive in environments that are marginal for other species, including wet-rock and cold environments. These traits may aid in the discovery and cultivation of novel species in this clade.
光合作用生物及其后代是已知唯一能够进行放氧光合作用的生物。它们的新陈代谢永久性地改变了地球表面和生命的进化轨迹,但人们对它们的进化历史知之甚少。深分歧光合生物门的基因组可能包含有关进化过程的线索。然而,在这个门内只有三个已公布的基因组,基于如此少的数据很难进行广泛的推断。在这里,我从公开数据库中描述了五个属于 门的物种,并检查了它们的光合作用基因含量以及 基因组和 16S rRNA 基因序列存在的环境。这些 含有简化的光合作用系统,栖息在寒冷、潮湿的岩石和低光照环境中。由于它们的生长速度较慢,它们的丰度可能较低。未来应该针对这些环境寻找 ,并且应该进行深度测序以捕获低丰度的分类群。公开数据库中包含 门内未描述的分类群。然而,使用当前方法搜索所有可用数据在计算上是昂贵的。因此,必须开发新的方法来搜索这些和其他具有进化重要性的分类群。一旦确定,这些新的光合生物将有助于阐明放氧光合作用的起源和进化。早期分支的光合生物,如 ,可能为放氧光合作用的进化历史提供线索,但该门的基因组或培养物很少。五个新的宏基因组组装基因组表明, 门的所有成员都含有简化的光合作用系统,并且缺乏与类囊体和昼夜节律相关的基因。它们的分布表明,它们可能在其他物种难以生存的环境中茁壮成长,包括潮湿的岩石和寒冷的环境。这些特征可能有助于在这个分支中发现和培养新的物种。