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Banff 2019 会议报告:实体器官移植中的分子诊断- Banff 人类器官移植 (B-HOT) 基因面板共识和开源多中心验证。

Banff 2019 Meeting Report: Molecular diagnostics in solid organ transplantation-Consensus for the Banff Human Organ Transplant (B-HOT) gene panel and open source multicenter validation.

机构信息

Department of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Canada.

Paris Translational Research Center for Organ Transplantation, INSERM U970 and Necker Hospital, University of Paris, Paris, France.

出版信息

Am J Transplant. 2020 Sep;20(9):2305-2317. doi: 10.1111/ajt.16059. Epub 2020 Jun 27.

Abstract

This meeting report from the XV Banff conference describes the creation of a multiorgan transplant gene panel by the Banff Molecular Diagnostics Working Group (MDWG). This Banff Human Organ Transplant (B-HOT) panel is the culmination of previous work by the MDWG to identify a broadly useful gene panel based on whole transcriptome technology. A data-driven process distilled a gene list from peer-reviewed comprehensive microarray studies that discovered and validated their use in kidney, liver, heart, and lung transplant biopsies. These were supplemented by genes that define relevant cellular pathways and cell types plus 12 reference genes used for normalization. The 770 gene B-HOT panel includes the most pertinent genes related to rejection, tolerance, viral infections, and innate and adaptive immune responses. This commercially available panel uses the NanoString platform, which can quantitate transcripts from formalin-fixed paraffin-embedded samples. The B-HOT panel will facilitate multicenter collaborative clinical research using archival samples and permit the development of an open source large database of standardized analyses, thereby expediting clinical validation studies. The MDWG believes that a pathogenesis and pathway based molecular approach will be valuable for investigators and promote therapeutic decision-making and clinical trials.

摘要

本会议报告介绍了班夫分子诊断工作组(MDWG)创建多器官移植基因面板的情况。这个班夫人类器官移植(B-HOT)面板是 MDWG 之前工作的结晶,旨在基于全转录组技术确定一个广泛适用的基因面板。一个数据驱动的过程从同行评审的综合微阵列研究中提取了一个基因列表,这些研究发现并验证了它们在肾、肝、心和肺移植活检中的应用。这些研究还补充了定义相关细胞途径和细胞类型的基因,以及 12 个用于归一化的参考基因。该 770 个基因的 B-HOT 面板包括与排斥、耐受、病毒感染以及固有和适应性免疫反应最相关的基因。这个商业上可用的面板使用了纳诺字符串平台,可以定量分析福尔马林固定石蜡包埋样本中的转录物。B-HOT 面板将有助于使用存档样本进行多中心合作临床研究,并允许开发一个开放源码的标准化分析大型数据库,从而加速临床验证研究。MDWG 认为,基于发病机制和途径的分子方法对研究人员具有价值,并促进治疗决策和临床试验。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dda2/7496585/2ada7f02f9be/AJT-20-2305-g001.jpg

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