Suppr超能文献

用于半定量代谢组学的非均匀采样二维异核单量子关联谱评估

Evaluation of Non-Uniform Sampling 2D H-C HSQC Spectra for Semi-Quantitative Metabolomics.

作者信息

Zhang Bo, Powers Robert, O'Day Elizabeth M

机构信息

Olaris, Inc., Waltham, MA 02451, USA.

Department of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68588-0304, USA.

出版信息

Metabolites. 2020 May 16;10(5):203. doi: 10.3390/metabo10050203.

Abstract

Metabolomics is the comprehensive study of metabolism, the biochemical processes that sustain life. By comparing metabolites between healthy and disease states, new insights into disease mechanisms can be uncovered. NMR is a powerful analytical method to detect and quantify metabolites. Standard one-dimensional (1D) H-NMR metabolite profiling is informative but challenged by significant chemical shift overlap. Multi-dimensional NMR can increase resolution, but the required long acquisition times lead to limited throughput. Non-uniform sampling (NUS) is a well-accepted mode of acquiring multi-dimensional NMR data, enabling either reduced acquisition times or increased sensitivity in equivalent time. Despite these advantages, the technique is not widely applied to metabolomics. In this study, we evaluated the utility of NUS H-C heteronuclear single quantum coherence (HSQC) for semi-quantitative metabolomics. We demonstrated that NUS improved sensitivity compared to uniform sampling (US). We verified that the NUS measurement maintains linearity, making it possible to detect metabolite changes across samples and studies. Furthermore, we calculated the lower limit of detection and quantification (LOD/LOQ) of common metabolites. Finally, we demonstrate that the measurements are repeatable on the same system and across different systems. In conclusion, our results detail the analytical capability of NUS and, in doing so, empower the future use of NUS H-C HSQC in metabolomic studies.

摘要

代谢组学是对维持生命的生化过程——新陈代谢的全面研究。通过比较健康状态和疾病状态下的代谢物,可以揭示疾病机制的新见解。核磁共振(NMR)是一种检测和定量代谢物的强大分析方法。标准的一维(1D)氢核磁共振代谢物谱分析很有信息量,但受到显著化学位移重叠的挑战。多维核磁共振可以提高分辨率,但所需的长时间采集导致通量有限。非均匀采样(NUS)是一种广泛接受的获取多维核磁共振数据的模式,能够在相同时间内减少采集时间或提高灵敏度。尽管有这些优点,该技术在代谢组学中并未得到广泛应用。在本研究中,我们评估了非均匀采样氢-碳异核单量子相干(HSQC)在半定量代谢组学中的效用。我们证明,与均匀采样(US)相比,非均匀采样提高了灵敏度。我们验证了非均匀采样测量保持线性,使得能够检测不同样本和研究中的代谢物变化。此外,我们计算了常见代谢物的检测和定量下限(LOD/LOQ)。最后,我们证明这些测量在同一系统和不同系统上都是可重复的。总之,我们的结果详细说明了非均匀采样的分析能力,从而为未来在代谢组学研究中使用非均匀采样氢-碳HSQC提供了支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/908b/7281502/1a8bffbc898f/metabolites-10-00203-g001.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验