• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

产脂肽菌株荧光假单胞菌DSM 11579的基因组序列草图及与密切相关的产脂肽菌株sp.菌株SH-C52的比较基因组学

Draft Genome Sequence of Lipopeptide-Producing Strain Pseudomonas fluorescens DSM 11579 and Comparative Genomics with sp. Strain SH-C52, a Closely Related Lipopeptide-Producing Strain.

作者信息

Kirchner Norbert, Cano-Prieto Carolina, van der Voort Menno, Raaijmakers Jos M, Gross Harald

机构信息

Department of Pharmaceutical Biology, Pharmaceutical Institute, University of Tübingen, Tübingen, Germany.

German Centre for Infection Research (DZIF), Partner Site Tübingen, Tübingen, Germany.

出版信息

Microbiol Resour Announc. 2020 May 21;9(21):e00304-20. doi: 10.1128/MRA.00304-20.

DOI:10.1128/MRA.00304-20
PMID:32439665
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7242667/
Abstract

DSM 11579 is known to be a producer of the lipopeptides brabantamide and thanamycin. Its draft genome gives insight into the complete secondary metabolite production capacity of the strain and builds the basis for a comparative study with sp. strain SH-C52, a lipopeptide-producing strain involved in natural disease-suppressive soils.

摘要

已知DSM 11579是脂肽布拉班酰胺和纳那霉素的生产者。其基因组草图揭示了该菌株完整的次级代谢产物生产能力,并为与sp.菌株SH-C52(一种参与天然抑病土壤的脂肽生产菌株)进行比较研究奠定了基础。

相似文献

1
Draft Genome Sequence of Lipopeptide-Producing Strain Pseudomonas fluorescens DSM 11579 and Comparative Genomics with sp. Strain SH-C52, a Closely Related Lipopeptide-Producing Strain.产脂肽菌株荧光假单胞菌DSM 11579的基因组序列草图及与密切相关的产脂肽菌株sp.菌株SH-C52的比较基因组学
Microbiol Resour Announc. 2020 May 21;9(21):e00304-20. doi: 10.1128/MRA.00304-20.
2
Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds.根际细菌假单胞菌属SH-C52抗菌化合物的基因组挖掘与代谢谱分析
Front Microbiol. 2015 Jul 7;6:693. doi: 10.3389/fmicb.2015.00693. eCollection 2015.
3
Discovery of Thanafactin A, a Linear, Proline-Containing Octalipopeptide from sp. SH-C52, Motivated by Genome Mining.发现源于 sp. SH-C52 的线性脯氨酸八肽化合物 Thanafactin A,受基因组挖掘启发。
J Nat Prod. 2021 Jan 22;84(1):101-109. doi: 10.1021/acs.jnatprod.0c01174. Epub 2020 Dec 31.
4
Involvement of phenazines and lipopeptides in interactions between Pseudomonas species and Sclerotium rolfsii, causal agent of stem rot disease on groundnut.吩嗪类化合物和脂肽参与了假单胞菌属和导致落花生茎腐病的罗耳伏革菌之间的相互作用。
J Appl Microbiol. 2012 Feb;112(2):390-403. doi: 10.1111/j.1365-2672.2011.05205.x. Epub 2011 Dec 20.
5
Biosynthetic origin of the antibiotic cyclocarbamate brabantamide A (SB-253514) in plant-associated Pseudomonas.植物相关假单胞菌中环氨酯类抗生素 SB-253514(布拉班塔米 A)的生物合成起源。
Chembiochem. 2014 Jan 24;15(2):259-66. doi: 10.1002/cbic.201300527.
6
Transporter Gene-Mediated Typing for Detection and Genome Mining of Lipopeptide-Producing Pseudomonas.基于转运基因的表型分型检测和脂肽产生假单胞菌的基因组挖掘
Appl Environ Microbiol. 2022 Jan 25;88(2):e0186921. doi: 10.1128/AEM.01869-21. Epub 2021 Nov 3.
7
Draft Genome Sequence of Pseudomonas fluorescens LMG 5329, a White Line-Inducing Principle-Producing Bioindicator for the Mushroom Pathogen Pseudomonas tolaasii.荧光假单胞菌LMG 5329的基因组序列草图,一种用于蘑菇病原菌托拉斯假单胞菌的产白线诱导因子的生物指示剂
Genome Announc. 2013 Jul 25;1(4):e00383-13. doi: 10.1128/genomeA.00383-13.
8
Discovery of the Cyclic Lipopeptide Gacamide A by Genome Mining and Repair of the Defective GacA Regulator in Pseudomonas fluorescens Pf0-1.通过基因组挖掘发现环状脂肽 Gacamide A 及其在荧光假单胞菌 Pf0-1 中缺陷型 GacA 调控子的修复。
J Nat Prod. 2019 Feb 22;82(2):301-308. doi: 10.1021/acs.jnatprod.8b00747. Epub 2019 Jan 22.
9
Draft Genome Sequence of Cyclic Lipopeptide Producer sp. Strain SWRI103, Isolated from Wheat Rhizosphere.从小麦根际分离的环状脂肽产生菌sp.菌株SWRI103的基因组序列草图
Microbiol Resour Announc. 2020 Jul 2;9(27):e00538-20. doi: 10.1128/MRA.00538-20.
10
Draft Genome Sequence of the Novonestmycin-Producing Strain Streptomyces sp. Z26, Isolated from Potato Rhizosphere in Morocco.从摩洛哥马铃薯根际分离出的新诺丝菌素产生菌株链霉菌属Z26的基因组序列草图
Microbiol Resour Announc. 2019 Jan 3;8(1). doi: 10.1128/MRA.01514-18. eCollection 2019 Jan.

引用本文的文献

1
BioCAT: Search for biosynthetic gene clusters producing nonribosomal peptides with known structure.生物催化与代谢组学技术资源库(BioCAT):搜索产生具有已知结构的非核糖体肽的生物合成基因簇。
Comput Struct Biotechnol J. 2022 Mar 4;20:1218-1226. doi: 10.1016/j.csbj.2022.02.013. eCollection 2022.
2
Mitigation of virulence by signal inactivation.通过信号失活减轻毒力。
Sci Adv. 2021 Sep 10;7(37):eabg2293. doi: 10.1126/sciadv.abg2293. Epub 2021 Sep 8.

本文引用的文献

1
Draft Genome Sequence of Pseudomonas chlororaphis subsp. ARS-38, a Bacterial Strain with Plant Growth Promotion Potential, Isolated from the Rhizosphere of Cotton in Pakistan.从巴基斯坦棉花根际分离的具有促进植物生长潜力的细菌菌株绿针假单胞菌ARS-38的基因组序列草图
Microbiol Resour Announc. 2020 Jan 16;9(3):e01398-19. doi: 10.1128/MRA.01398-19.
2
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.TYGS 是一个自动化的高通量平台,用于最先进的基于基因组的分类学。
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
3
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.antiSMASH 5.0:二次代谢产物基因组挖掘管道的更新。
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87. doi: 10.1093/nar/gkz310.
4
Biosynthesis of fragin is controlled by a novel quorum sensing signal. fragin 的生物合成受一种新型群体感应信号的控制。
Nat Commun. 2018 Mar 30;9(1):1297. doi: 10.1038/s41467-018-03690-2.
5
The Systematic Investigation of the Quorum Sensing System of the Biocontrol Strain Pseudomonas chlororaphis subsp. aurantiaca PB-St2 Unveils aurI to Be a Biosynthetic Origin for 3-Oxo-Homoserine Lactones.生防菌株嗜橙黄假单胞菌PB-St2群体感应系统的系统研究揭示aurI是3-氧代高丝氨酸内酯的生物合成起源。
PLoS One. 2016 Nov 18;11(11):e0167002. doi: 10.1371/journal.pone.0167002. eCollection 2016.
6
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products.用于发现模块化天然产物的自动化基因组到天然产物平台(GNP)。
Nat Commun. 2015 Sep 28;6:8421. doi: 10.1038/ncomms9421.
8
Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds.根际细菌假单胞菌属SH-C52抗菌化合物的基因组挖掘与代谢谱分析
Front Microbiol. 2015 Jul 7;6:693. doi: 10.3389/fmicb.2015.00693. eCollection 2015.
9
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.从全球原核生物生物合成基因簇分析看次生代谢。
Cell. 2014 Jul 17;158(2):412-421. doi: 10.1016/j.cell.2014.06.034.
10
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.SSPACE-LongRead:利用长读段序列信息搭建细菌草图基因组支架
BMC Bioinformatics. 2014 Jun 20;15:211. doi: 10.1186/1471-2105-15-211.