• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

从小麦根际分离的环状脂肽产生菌sp.菌株SWRI103的基因组序列草图

Draft Genome Sequence of Cyclic Lipopeptide Producer sp. Strain SWRI103, Isolated from Wheat Rhizosphere.

作者信息

Zarvandi Samira, Bahrami Tahereh, Pauwels Brent, Asgharzadeh Ahmad, Hosseini-Mazinani Mehdi, Salari Farzaneh, Girard Léa, De Mot René, Rokni-Zadeh Hassan

机构信息

Department of Medical Biotechnology, School of Medicine, Zanjan University of Medical Sciences, Zanjan, Iran.

Department of Microbial and Molecular Systems, Faculty of Bioscience Engineering, University of Leuven, Heverlee-Leuven, Belgium.

出版信息

Microbiol Resour Announc. 2020 Jul 2;9(27):e00538-20. doi: 10.1128/MRA.00538-20.

DOI:10.1128/MRA.00538-20
PMID:32616641
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7330243/
Abstract

The draft genome sequence of wheat rhizosphere isolate sp. strain SWRI103 is reported. This strain carries several gene clusters encoding nonribosomal peptide synthetases (NRPSs), including a system for cyclic lipopeptide (CLP) production, and genes for carotenoid biosynthesis.

摘要

报道了小麦根际分离株sp. 菌株SWRI103的基因组序列草图。该菌株携带多个编码非核糖体肽合成酶（NRPS）的基因簇，包括一个环状脂肽（CLP）生产系统，以及类胡萝卜素生物合成基因。

相似文献

1
Draft Genome Sequence of Cyclic Lipopeptide Producer sp. Strain SWRI103, Isolated from Wheat Rhizosphere.从小麦根际分离的环状脂肽产生菌sp.菌株SWRI103的基因组序列草图
Microbiol Resour Announc. 2020 Jul 2;9(27):e00538-20. doi: 10.1128/MRA.00538-20.
2
Analysis of the complete genome sequence of a rhizosphere-derived sp. HN3-2 leads to the characterization of a cyclic lipopeptide-type antibiotic bananamide C.对一株根际来源的菌株HN3-2的全基因组序列分析，鉴定出一种环脂肽类抗生素香蕉酰胺C。
3 Biotech. 2022 Jan;12(1):35. doi: 10.1007/s13205-021-03100-3. Epub 2022 Jan 4.
3
Transporter Gene-Mediated Typing for Detection and Genome Mining of Lipopeptide-Producing Pseudomonas.基于转运基因的表型分型检测和脂肽产生假单胞菌的基因组挖掘
Appl Environ Microbiol. 2022 Jan 25;88(2):e0186921. doi: 10.1128/AEM.01869-21. Epub 2021 Nov 3.
4
Genome-based discovery, structure prediction and functional analysis of cyclic lipopeptide antibiotics in Pseudomonas species.基于基因组的假单胞菌属中环状脂肽抗生素的发现、结构预测及功能分析
Mol Microbiol. 2007 Jan;63(2):417-28. doi: 10.1111/j.1365-2958.2006.05525.x.
5
Draft Genome Sequence of Lipopeptide-Producing Strain Pseudomonas fluorescens DSM 11579 and Comparative Genomics with sp. Strain SH-C52, a Closely Related Lipopeptide-Producing Strain.产脂肽菌株荧光假单胞菌DSM 11579的基因组序列草图及与密切相关的产脂肽菌株sp.菌株SH-C52的比较基因组学
Microbiol Resour Announc. 2020 May 21;9(21):e00304-20. doi: 10.1128/MRA.00304-20.
6
[Nonribosomal peptides synthetases gene clusters and core domain in Pseudoalteromonas sp. NJ631].[假交替单胞菌NJ631中的非核糖体肽合成酶基因簇及核心结构域]
Wei Sheng Wu Xue Bao. 2012 Dec 4;52(12):1531-9.
7
and Genetic Analyses of Cyclic Lipopeptide Synthetic Gene Clusters in sp. 11K1.sp. 11K1中环状脂肽合成基因簇的基因分析
Front Microbiol. 2019 Mar 19;10:544. doi: 10.3389/fmicb.2019.00544. eCollection 2019.
8
Draft Genome Sequence of Streptomyces sp. TP-A0356, a Producer of Yatakemycin.链霉菌属TP-A0356（亚特霉烯素产生菌）的基因组序列草图
Genome Announc. 2015 Dec 10;3(6):e01446-15. doi: 10.1128/genomeA.01446-15.
9
Draft Genome Sequence of Pseudomonas sp. Strain In5 Isolated from a Greenlandic Disease Suppressive Soil with Potent Antimicrobial Activity.从具有强效抗菌活性的格陵兰抑病土壤中分离出的假单胞菌属菌株In5的基因组序列草图
Genome Announc. 2015 Nov 25;3(6):e01251-15. doi: 10.1128/genomeA.01251-15.
10
Draft Genome Sequence of Pseudomonas aeruginosa Strain LMG 1272, an Atypical White Line Reaction Producer.铜绿假单胞菌菌株LMG 1272（一种非典型白线反应产生菌）的基因组序列草图
Microbiol Resour Announc. 2020 Feb 13;9(7):e01363-19. doi: 10.1128/MRA.01363-19.

引用本文的文献

1
Genome mining and chemical characterization of a new cyclic lipopeptide associated with MDN-0066 from Pseudomonas moraviensis HN2 cultured in a valine-rich medium.在富含缬氨酸的培养基中培养的摩拉维亚假单胞菌HN2中，与MDN-0066相关的一种新型环脂肽的基因组挖掘及化学表征。
J Antibiot (Tokyo). 2023 Apr;76(4):244-248. doi: 10.1038/s41429-023-00597-z. Epub 2023 Jan 26.
2
An Nuclear Magnetic Resonance Fingerprint Matching Approach for the Identification and Structural Re-Evaluation of Pseudomonas Lipopeptides.一种基于核磁共振指纹图谱匹配的方法，用于鉴定和重新评估假单胞菌脂肽。
Microbiol Spectr. 2022 Aug 31;10(4):e0126122. doi: 10.1128/spectrum.01261-22. Epub 2022 Jul 25.
3
Lipopeptide-Mediated Biocontrol: Chemotaxonomy and Biological Activity.脂肽介导的生物防治：化学分类学与生物活性
Molecules. 2022 Jan 7;27(2):372. doi: 10.3390/molecules27020372.
4
Reliable Identification of Environmental Isolates Using the Gene.使用该基因对环境分离株进行可靠鉴定。
Microorganisms. 2020 Jul 31;8(8):1166. doi: 10.3390/microorganisms8081166.

本文引用的文献

1
Discovery and engineering of an endophytic strain from for efficient production of zeaxanthin diglucoside.从[具体来源]中发现并改造一种内生菌株以高效生产玉米黄质二葡萄糖苷。
J Biol Eng. 2019 Aug 1;13:66. doi: 10.1186/s13036-019-0196-x. eCollection 2019.
2
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.antiSMASH 5.0：二次代谢产物基因组挖掘管道的更新。
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87. doi: 10.1093/nar/gkz310.
3
Discovery of (Dihydro)pyrazine N-Oxides via Genome Mining in Pseudomonas.通过在假单胞菌中进行基因组挖掘发现（二氢）吡嗪 N-氧化物。
Org Lett. 2018 Aug 17;20(16):4791-4795. doi: 10.1021/acs.orglett.8b01944. Epub 2018 Aug 3.
4
Structural and functional analysis of the carotenoid biosynthesis genes of a Pseudomonas strain isolated from the excrement of Autumn Darter.从秋鳑鲏粪便中分离出的一株假单胞菌的类胡萝卜素生物合成基因的结构与功能分析
Biosci Biotechnol Biochem. 2018 Jun;82(6):1043-1052. doi: 10.1080/09168451.2017.1398069. Epub 2017 Dec 1.
5
Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides.对假单胞菌特化代谢组进行索引，使我们能够发现波伊酰胺 B 和香蕉酰胺。
Nat Microbiol. 2016 Oct 31;2:16197. doi: 10.1038/nmicrobiol.2016.197.
6
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
Mangotoxin production of Pseudomonas syringae pv. syringae is regulated by MgoA.丁香假单胞菌 pv. 丁香致病变种的芒果毒素产生受 MgoA 调控。
BMC Microbiol. 2014 Feb 21;14:46. doi: 10.1186/1471-2180-14-46.
8
Biosynthetic origin of the antibiotic cyclocarbamate brabantamide A (SB-253514) in plant-associated Pseudomonas.植物相关假单胞菌中环氨酯类抗生素 SB-253514（布拉班塔米 A）的生物合成起源。
Chembiochem. 2014 Jan 24;15(2):259-66. doi: 10.1002/cbic.201300527.
9
Characterization of the biocontrol activity of pseudomonas fluorescens strain X reveals novel genes regulated by glucose.荧光假单胞菌菌株 X 的生物防治活性特征揭示了受葡萄糖调控的新基因。
PLoS One. 2013 Apr 15;8(4):e61808. doi: 10.1371/journal.pone.0061808. Print 2013.
10
Nonribosomal assembly of natural lipocyclocarbamate lipoprotein-associated phospholipase inhibitors.天然脂环碳酸酯脂蛋白相关磷脂酶抑制剂的非核糖体装配。
Chembiochem. 2013 Mar 4;14(4):431-5. doi: 10.1002/cbic.201200598. Epub 2013 Feb 10.