Metagenomic Characterization of the Respiratory Microbiome. A Pièce de Résistance.
作者信息
Ritchie Andrew I, Singanayagam Aran
机构信息
National Heart and Lung InstituteImperial CollegeLondon, United Kingdom.
出版信息
Am J Respir Crit Care Med. 2020 Aug 1;202(3):321-322. doi: 10.1164/rccm.202005-1686ED.
Abstract
摘要
相似文献
1
Metagenomic Characterization of the Respiratory Microbiome. A Pièce de Résistance.呼吸道微生物群的宏基因组学特征。关键部分。
Am J Respir Crit Care Med. 2020 Aug 1;202(3):321-322. doi: 10.1164/rccm.202005-1686ED.
2
Application of metagenomics in the human gut microbiome.宏基因组学在人类肠道微生物组中的应用。
World J Gastroenterol. 2015 Jan 21;21(3):803-14. doi: 10.3748/wjg.v21.i3.803.
3
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.通过验证的视角看宏基因组组装：评估和提高宏基因组组装基因组质量的最新进展。
Brief Bioinform. 2019 Jul 19;20(4):1140-1150. doi: 10.1093/bib/bbx098.
4
Metagenomics-Guided Discovery of Potential Bacterial Metallothionein Genes from the Soil Microbiome That Confer Cu and/or Cd Resistance.基于宏基因组学的方法从土壤微生物组中发现潜在的细菌金属硫蛋白基因，这些基因能够赋予铜和/或镉抗性。
Appl Environ Microbiol. 2020 Apr 17;86(9). doi: 10.1128/AEM.02907-19.
5
A metagenomic strategy for harnessing the chemical repertoire of the human microbiome.一种利用人类微生物组化学库的宏基因组策略。
Science. 2019 Dec 13;366(6471). doi: 10.1126/science.aax9176. Epub 2019 Oct 3.
6
NBZIMM: negative binomial and zero-inflated mixed models, with application to microbiome/metagenomics data analysis.NBZIMM：负二项式和零膨胀混合模型，应用于微生物组/宏基因组数据分析。
BMC Bioinformatics. 2020 Oct 30;21(1):488. doi: 10.1186/s12859-020-03803-z.
7
Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.肠道微生物群落在具有宏基因组读段云测序和组装特征的极端选择压力下占主导地位。
BMC Bioinformatics. 2019 Dec 2;20(Suppl 16):585. doi: 10.1186/s12859-019-3073-1.
8
Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes.用于比较宏基因组学的消减组装及其在2型糖尿病宏基因组中的应用。
Genome Biol. 2015 Nov 2;16:243. doi: 10.1186/s13059-015-0804-0.
9
Metagenomic approaches: effective tools for monitoring the structure and functionality of microbiomes in anaerobic digestion systems.宏基因组学方法：监测厌氧消化系统中微生物组结构和功能的有效工具。
Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9379-9390. doi: 10.1007/s00253-019-10052-5. Epub 2019 Nov 9.
10
Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.基于 DNA 甲基化的宏基因组分箱和质粒与细菌宿主基因组的关联。
Nat Biotechnol. 2018 Jan;36(1):61-69. doi: 10.1038/nbt.4037. Epub 2017 Dec 11.
引用本文的文献
1
Respiratory microbiota, host immunity, respiratory viral infections and malignant tumors.呼吸道微生物群、宿主免疫、呼吸道病毒感染与恶性肿瘤。
Front Microbiol. 2025 Jul 10;16:1626077. doi: 10.3389/fmicb.2025.1626077. eCollection 2025.
2
The airway mycobiome and interactions with immunity in health and chronic lung disease.气道真菌微生物群及其在健康和慢性肺病中与免疫的相互作用。
Oxf Open Immunol. 2024 Aug 22;5(1):iqae009. doi: 10.1093/oxfimm/iqae009. eCollection 2024.
3
The application status of sequencing technology in global respiratory infectious disease diagnosis.测序技术在全球呼吸道传染病诊断中的应用现状
Infection. 2024 Dec;52(6):2169-2181. doi: 10.1007/s15010-024-02360-4. Epub 2024 Aug 16.
4
Informed interpretation of metagenomic data by StrainPhlAn enables strain retention analyses of the upper airway microbiome.通过 StrainPhlAn 对宏基因组数据进行知情解释，可实现对上呼吸道微生物组的菌株保留分析。
mSystems. 2023 Dec 21;8(6):e0072423. doi: 10.1128/msystems.00724-23. Epub 2023 Nov 2.
5
The Role of the Respiratory Microbiome in the Pathogenesis of Aspiration Pneumonia: Implications for Diagnosis and Potential Therapeutic Choices.呼吸道微生物群在吸入性肺炎发病机制中的作用：对诊断的意义及潜在治疗选择
Antibiotics (Basel). 2023 Jan 10;12(1):140. doi: 10.3390/antibiotics12010140.
6
Bacterial Signatures of Paediatric Respiratory Disease: An Individual Participant Data Meta-Analysis.儿童呼吸道疾病的细菌特征：一项个体参与者数据荟萃分析
Front Microbiol. 2021 Dec 23;12:711134. doi: 10.3389/fmicb.2021.711134. eCollection 2021.
本文引用的文献
1
Metagenomics Reveals a Core Macrolide Resistome Related to Microbiota in Chronic Respiratory Disease.宏基因组学揭示了与慢性呼吸道疾病相关的微生物群核心大环内酯类耐药组。
Am J Respir Crit Care Med. 2020 Aug 1;202(3):433-447. doi: 10.1164/rccm.201911-2202OC.
2
British Thoracic Society guideline for the use of long-term macrolides in adults with respiratory disease.英国胸科学会关于成人呼吸系统疾病患者使用长期大环内酯类药物的指南。
Thorax. 2020 May;75(5):370-404. doi: 10.1136/thoraxjnl-2019-213929. Epub 2020 Apr 17.
3
Targeted Retreatment of Incompletely Recovered Chronic Obstructive Pulmonary Disease Exacerbations with Ciprofloxacin. A Double-Blind, Randomized, Placebo-controlled, Multicenter, Phase III Clinical Trial.左氧氟沙星治疗未完全缓解的慢性阻塞性肺疾病加重的靶向治疗：一项双盲、随机、安慰剂对照、多中心、III 期临床试验。
Am J Respir Crit Care Med. 2020 Aug 15;202(4):549-557. doi: 10.1164/rccm.201910-2058OC.
4
Inhaled corticosteroid suppression of cathelicidin drives dysbiosis and bacterial infection in chronic obstructive pulmonary disease.吸入性皮质类固醇抑制抗菌肽导致慢性阻塞性肺疾病的微生态失调和细菌感染。
Sci Transl Med. 2019 Aug 28;11(507). doi: 10.1126/scitranslmed.aav3879.
5
Long-Term Azithromycin Reduces and Increases Antibiotic Resistance in Severe Asthma.长期使用阿奇霉素可降低和增加严重哮喘的抗生素耐药性。
Am J Respir Crit Care Med. 2019 Aug 1;200(3):309-317. doi: 10.1164/rccm.201809-1739OC.
6
Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles.人类和细胞外 DNA 去除在复杂临床感染样本宏基因组分析中的应用，可优化可行微生物组图谱。
Cell Rep. 2019 Feb 19;26(8):2227-2240.e5. doi: 10.1016/j.celrep.2019.01.091.
7
Evaluation of the airway microbiome in nontuberculous mycobacteria disease.非结核分枝杆菌病气道微生物组评估。
Eur Respir J. 2018 Oct 25;52(4). doi: 10.1183/13993003.00810-2018. Print 2018 Oct.
8
Bacterial biogeography of adult airways in atopic asthma.特应性哮喘成人气道中的细菌生物地理学。
Microbiome. 2018 Jun 9;6(1):104. doi: 10.1186/s40168-018-0487-3.
9
Effect of azithromycin on asthma exacerbations and quality of life in adults with persistent uncontrolled asthma (AMAZES): a randomised, double-blind, placebo-controlled trial.阿奇霉素对持续性未控制哮喘成人哮喘加重和生活质量的影响（AMAZES）：一项随机、双盲、安慰剂对照试验。
Lancet. 2017 Aug 12;390(10095):659-668. doi: 10.1016/S0140-6736(17)31281-3. Epub 2017 Jul 4.
10
Randomised, double-blind, placebo-controlled trial with azithromycin selects for anti-inflammatory microbial metabolites in the emphysematous lung.阿奇霉素随机、双盲、安慰剂对照试验筛选出肺气肿肺中的抗炎性微生物代谢产物。
Thorax. 2017 Jan;72(1):13-22. doi: 10.1136/thoraxjnl-2016-208599. Epub 2016 Aug 2.
Zotero 插件