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基于 15 个常染色体 STR 标记的阿塞拜疆人群的群体遗传学和种群间比较研究。

Population-genetic and comparative interpopulation studies of Azerbaijan population based on the 15 autosomal STR markers.

机构信息

Biology Department, Scientific-Practical Unit of "Pathological Anatomy and Forensic Medical Expertise", Ministry of Health of the Azerbaijan Republicl 1 Mir-gasimov, AZ 1078 Baku, Azerbaijan.

Institute of Molecular Biology & Biotechnologies, Azerbaijan National Academy of Sciences, 11 Izzat Nabiyev, AZ1073 Baku, Azerbaijan; Biology Department, Scientific-Practical Unit of "Pathological Anatomy and Forensic Medical Expertise", Ministry of Health of the Azerbaijan Republicl 1 Mir-gasimov, AZ 1078 Baku, Azerbaijan.

出版信息

Gene. 2020 Aug 30;753:144804. doi: 10.1016/j.gene.2020.144804. Epub 2020 May 20.

Abstract

We have investigated 765 unrelated individuals from Azerbaijan using AmpFlSTR® Identifiler® Plus PCR Amplification Kit. For each STR locus basic population-genetic and forensic parameters were determined. The calculated P-values (P) for the accuracy of the Hardy-Weinberg equilibrium (HWE) tests, showed that this parameter had a statistically significant value (P = 0.0000) only for the THO1, D18S51 and FGA loci. The values of parameters for the set of 15 STR loci such as CPE, CPD, CTPI and the PP showed that the given set of loci can be confidently used to solve identification problems for the studied population. Multiple population differentiation tests performed between Azerbaijan and other 17 world populations revealed that between Azerbaijan and Iraqi, Iranian, Turkish populations there were no significant differences on all STR loci. Additionally, comparisons of Fischer genetic distance indices (F) P-values did not reveal any statistically significant difference between Azerbaijan and Iranian populations at P < 0.05. However, with South African black population differences at all STR loci were detected. Both tests did not reveal a locus by which our population would differ from all the other compared populations. PCA and PCoA analyzes showed that the Azerbaijani population was grouped with different populations in different quarters, showing a negative and zero correlation, respectively. Regarding the location of the Azerbaijan population, there are some differences between NJ and UPGMA phylogenetic trees. For example, in the NJ tree, Azerbaijan population was grouped with Iranian, but in the UPGMA tree, it was grouped with the Turkish population. Based on Nei's genetic distance between populations the second tree has a more realistic outcome.

摘要

我们使用 AmpFlSTR® Identifiler® Plus PCR 扩增试剂盒对来自阿塞拜疆的 765 名无关个体进行了研究。对于每个 STR 基因座,都确定了基本的群体遗传学和法医学参数。哈迪-温伯格平衡(HWE)测试准确性的计算 P 值(P)表明,该参数仅在 THO1、D18S51 和 FGA 基因座具有统计学意义(P = 0.0000)。对于 CPE、CPD、CTPI 和 PP 等 15 个 STR 基因座的参数值表明,给定的基因座集可以有信心地用于解决研究人群的识别问题。在阿塞拜疆与其他 17 个世界人群之间进行的多个群体分化测试表明,在所有 STR 基因座上,阿塞拜疆与伊拉克、伊朗和土耳其人群之间没有显著差异。此外,比较 Fischer 遗传距离指数(F)的 P 值表明,在 P < 0.05 时,阿塞拜疆和伊朗人群之间没有统计学上的显著差异。然而,与南非黑人人口相比,在所有 STR 基因座上都检测到了差异。这两种测试都没有发现一个基因座可以使我们的人群与所有其他比较人群不同。PCA 和 PCoA 分析表明,阿塞拜疆人群在不同象限与不同人群分组,分别呈负相关和零相关。关于阿塞拜疆人口的位置,NJ 和 UPGMA 系统发育树之间存在一些差异。例如,在 NJ 树中,阿塞拜疆人口与伊朗人群聚类,但在 UPGMA 树中,它与土耳其人群聚类。基于种群之间的 Nei 遗传距离,第二棵树具有更现实的结果。

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