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RTRIP: a comprehensive profile of transposon insertion polymorphisms in rice.

作者信息

Liu Zhen, Wang Tingzhang, Wang Lin, Zhao Han, Yue Erkui, Yan Yan, Irshad Faiza, Zhou Ling, Duan Ming-Hua, Xu Jian-Hong

机构信息

Institute of Crop Science, Zhejiang Key Laboratory of Crop Germplasm, Zhejiang University, Hangzhou, China.

Zhejiang Institute of Microbiology, Hangzhou, China.

出版信息

Plant Biotechnol J. 2020 Dec;18(12):2379-2381. doi: 10.1111/pbi.13425. Epub 2020 Jun 15.

DOI:10.1111/pbi.13425
PMID:32473053
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7680536/
Abstract
摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36fd/11386626/fe3f357c0e15/PBI-18-2379-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36fd/11386626/fe3f357c0e15/PBI-18-2379-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36fd/11386626/fe3f357c0e15/PBI-18-2379-g001.jpg

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Mol Biol Evol. 2017 Sep 1;34(9):2187-2202. doi: 10.1093/molbev/msx155.
2
Transposable element polymorphisms recapitulate human evolution.转座元件多态性概括了人类进化。
Mob DNA. 2015 Nov 16;6:21. doi: 10.1186/s13100-015-0052-6. eCollection 2015.
3
The 3,000 rice genomes project.三千水稻基因组计划。
追踪移动DNA:从分子尺度到群体尺度
Front Plant Sci. 2022 Feb 1;13:837378. doi: 10.3389/fpls.2022.837378. eCollection 2022.
4
Extensively Current Activity of Transposable Elements in Natural Rice Accessions Revealed by Singleton Insertions.单拷贝插入揭示自然水稻种质中转座元件的广泛当前活性
Front Plant Sci. 2021 Sep 28;12:745526. doi: 10.3389/fpls.2021.745526. eCollection 2021.
5
SINE jumping contributes to large-scale polymorphisms in the pig genomes.短散在重复序列(SINE)跳跃导致猪基因组中的大规模多态性。
Mob DNA. 2021 Jun 28;12(1):17. doi: 10.1186/s13100-021-00246-y.
6
Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project.全基因组关联研究剖析了来自3000份水稻基因组计划的多样化水稻群体中对白叶枯病的抗性位点。
Rice (N Y). 2021 Feb 27;14(1):22. doi: 10.1186/s12284-021-00462-3.
Gigascience. 2014 May 28;3:7. doi: 10.1186/2047-217X-3-7. eCollection 2014.
4
The bright side of transposons in crop evolution.转座子在作物进化中的积极作用。
Brief Funct Genomics. 2014 Jul;13(4):276-95. doi: 10.1093/bfgp/elu002. Epub 2014 Mar 27.
5
How important are transposons for plant evolution?转座子对植物进化有多重要?
Nat Rev Genet. 2013 Jan;14(1):49-61. doi: 10.1038/nrg3374.
6
Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster.对 DNA 混合样本进行测序(Pool-Seq)揭示了黑腹果蝇中转座元件插入的复杂动态。
PLoS Genet. 2012 Jan;8(1):e1002487. doi: 10.1371/journal.pgen.1002487. Epub 2012 Jan 26.
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Nat Genet. 2011 Sep 25;43(11):1160-3. doi: 10.1038/ng.942.
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