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[物种名称1]和[物种名称2]线粒体基因组的系统发育意义

The Phylogenetic Implications of the Mitochondrial Genomes of and .

作者信息

Wang Jia-Jia, Wu Yun-Fei, Yang Mao-Fa, Dai Ren-Huai

机构信息

The Provincial Key Laboratory for Agricultural Pest Management Mountainous Region, Institute of Entomology, Guizhou University, Guiyang, China.

出版信息

Front Genet. 2020 May 20;11:443. doi: 10.3389/fgene.2020.00443. eCollection 2020.

Abstract

Macropsinae are forest pests that feed on woody plants. They can damage the growth of trees and crops, and some species can also spread plant pathogens. Due to their widespread effects, these leafhoppers are of great economic significance, which is why there is a need to study their genomes. To fill the gap in the mitochondrial genomic data of the subfamily Macropsinae, we sequenced the complete mitochondrial genomes of and (which were 16,323 and 15,927 bp long, respectively). These two species are representative species of the leafhoppers group (Cicadellidae); the mitochondrial genomes of these species range from a length of 15,131 bp () to 16,811 bp (). Both mitogenomes contained 37 typical insect mitochondrial genes and a control region; there were no long non-coding sequences. The genes within the mitogenome were very compact. The mitogenomes from both species contained two kinds of parallel repeat units in the control region. The whole mitogenomes of Macropsinae showed a heavy AT nucleotide bias ( 76.8% and 79.0%), a positive AT Skew (0.15 and 0.12), and a negative GC Skew (-0.14 and -0.08). Upon comparative ML and BI analysis, some clade relationships were consistent among the six trees. Most subfamilies were reconstructed into monophyletic groups with strong support in all analyses, with the exception of Evacanthinae and Cicadellinae. Unlike the results of previous research, it was shown that although all Deltocephalinae species are grouped into one clade, they were not the sister group to all other leafhoppers. Further, Cicadellinae and Evacanthinae were occasionally reconstructed as a polyphyletic and a paraphyletic group, respectively, possibly due to the limited numbers of samples and sequences. This mitogenome information for and could facilitate future studies on the mitogenomic diversity and evolution of the related Membracoidea, and eventually help to control their effects on plants for the betterment of society at large.

摘要

大叶蝉亚科是取食木本植物的森林害虫。它们会损害树木和农作物的生长,一些种类还能传播植物病原体。由于其广泛的影响,这些叶蝉具有重大的经济意义,这就是需要研究它们基因组的原因。为了填补大叶蝉亚科线粒体基因组数据的空白,我们对[物种1]和[物种2]的完整线粒体基因组进行了测序(长度分别为16,323和15,927碱基对)。这两个物种是叶蝉类群(叶蝉科)的代表性物种;这些物种的线粒体基因组长度从15,131碱基对([物种3])到16,811碱基对([物种4])不等。两个线粒体基因组都包含37个典型的昆虫线粒体基因和一个控制区;没有长的非编码序列。线粒体基因组内的基因非常紧凑。来自这两个物种的线粒体基因组在控制区含有两种平行重复单元。大叶蝉亚科的整个线粒体基因组显示出强烈的AT核苷酸偏向性(分别为76.8%和79.0%)、正的AT偏斜(0.15和0.12)以及负的GC偏斜(-0.14和-0.08)。经过比较最大似然法(ML)和贝叶斯推断(BI)分析,六棵树之间的一些分支关系是一致的。除了片角叶蝉亚科和叶蝉亚科外,大多数亚科在所有分析中都被重建为单系类群且支持度很高。与之前的研究结果不同,研究表明虽然所有小叶蝉亚科物种都被归为一个分支,但它们并不是所有其他叶蝉的姐妹群。此外,叶蝉亚科和片角叶蝉亚科偶尔分别被重建为多系类群和并系类群,这可能是由于样本和序列数量有限。[物种1]和[物种2]的这个线粒体基因组信息有助于未来对相关膜翅目线粒体基因组多样性和进化的研究,并最终有助于控制它们对植物的影响,以造福整个社会。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/762a/7251781/246c0e90c92e/fgene-11-00443-g001.jpg

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