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西南喀斯特地区两种新线粒体基因组 和 的系统发育分析。

Phylogenetic Analysis of Two New Mitochondrial Genomes of and from the Karst Region of Southwest China.

机构信息

School of Karst Science, Guizhou Normal University, Guiyang 550001, China.

State Engineering Technology Institute for Karst Desertification Control, Guiyang 550001, China.

出版信息

Genes (Basel). 2023 Jun 23;14(7):1318. doi: 10.3390/genes14071318.

Abstract

Leafhoppers have been identified as a serious threat to different plants. To explore the characteristics of mitogenomes and reveal the phylogenetic positions of two species in the Typhlocybinae, complete mitogenomes of and were sequenced and annotated for the first time with lengths of 15,402 bp and 15,383 bp, respectively. The two mitogenomes contained 13 PCGs, 22 tRNA genes and 2 rRNA genes. The genome content, gene order, nucleotide composition, codon usage and amino acid composition are similar to those of other typical mitogenomes of Typhlocybinae. All 13 PCGs started with ATN codons, except for (TTA) and (TTG). All tRNAs were folded into a typical cloverleaf secondary structure, except for tRNA and tRNA. Moreover, phylogenetic trees were constructed and analyzed based on all the PCGs from 42 mitogenomes using maximum likelihood (ML) and Bayesian inference (BI) methods. The results supported that eleven subfamilies are all monophyletic groups, and are members of Erythroneurini, but and the genus have a very close relationship with ((((+ ) + ) + ) + ), and is closely related to the genus (( + ) + ). These results provide valuable information for future study of evolutionary relationships in Typhlocybinae.

摘要

叶蝉已被确定为不同植物的严重威胁。为了探索线粒体基因组的特征,并揭示 Typhlocybinae 两个物种的系统发育位置,首次对 和 进行了测序和注释,其长度分别为 15402bp 和 15383bp。这两个线粒体基因组包含 13 个 PCGs、22 个 tRNA 基因和 2 个 rRNA 基因。基因组的组成、基因顺序、核苷酸组成、密码子使用和氨基酸组成与其他典型的 Typhlocybinae 线粒体基因组相似。所有 13 个 PCGs 均以 ATN 密码子起始,除了 (TTA)和 (TTG)。所有 tRNA 都折叠成典型的三叶草二级结构,除了 tRNA 和 tRNA。此外,还基于 42 个线粒体基因组的所有 PCGs 构建和分析了基于最大似然法(ML)和贝叶斯推断(BI)方法的系统发育树。结果支持 11 个亚科都是单系群, 和 是 Erythroneurini 的成员,但 和属与 (((+ ) + ) + ) + ) 关系非常密切, 与属 (( + ) + ) 密切相关。这些结果为进一步研究 Typhlocybinae 的进化关系提供了有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8f4/10379811/a34d48587b5c/genes-14-01318-g001.jpg

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