Department of Experimental Biology, Faculty of Science, Masaryk University, 625 00, Brno, Czech Republic.
Central European Institute of Technology, Masaryk University, 625 00, Brno, Czech Republic.
Nat Commun. 2020 Jun 15;11(1):3034. doi: 10.1038/s41467-020-16669-9.
Alphaproteobacteria, which are the most abundant microorganisms of temperate oceans, produce phage-like particles called gene transfer agents (GTAs) that mediate lateral gene exchange. However, the mechanism by which GTAs deliver DNA into cells is unknown. Here we present the structure of the GTA of Rhodobacter capsulatus (RcGTA) and describe the conformational changes required for its DNA ejection. The structure of RcGTA resembles that of a tailed phage, but it has an oblate head shortened in the direction of the tail axis, which limits its packaging capacity to less than 4,500 base pairs of linear double-stranded DNA. The tail channel of RcGTA contains a trimer of proteins that possess features of both tape measure proteins of long-tailed phages from the family Siphoviridae and tail needle proteins of short-tailed phages from the family Podoviridae. The opening of a constriction within the RcGTA baseplate enables the ejection of DNA into bacterial periplasm.
α变形菌门是温带海洋中最丰富的微生物,它们能够产生类似于噬菌体的颗粒,称为基因转移因子(GTAs),介导侧向基因交换。然而,GTAs 将 DNA 递送入细胞的机制尚不清楚。本文呈现了荚膜红细菌(RcGTA)的 GTA 结构,并描述了其 DNA 逐出所需的构象变化。RcGTA 的结构类似于有尾噬菌体,但它的头部呈扁形,沿尾轴方向缩短,这限制了其包装能力,使其只能容纳小于 4500 个碱基对的线性双链 DNA。RcGTA 的尾部通道包含一个三聚体蛋白质,它具有长尾噬菌体家族的 Siphoviridae 类的量尺蛋白和短尾噬菌体家族的 Podoviridae 类的尾部针蛋白的特征。在 RcGTA 基板内的收缩开口允许 DNA 被逐出到细菌周质中。