COnTORT：用于从NCBI基因表达综合数据库同时检索和整理大量基因表达数据集的综合转录组组织工具。
COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database.
作者信息
Myers Kevin S, Place Michael, Noguera Daniel R, Donohue Timothy J
机构信息
Wisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Department of Civil & Environmental Engineering, University of Wisconsin-Madison, Madison, Wisconsin, USA.
出版信息
Microbiol Resour Announc. 2020 Jun 18;9(25):e00587-20. doi: 10.1128/MRA.00587-20.
We introduce COnTORT (mprehensive ranscriptomic ganizational ool), a publicly available program that retrieves all available gene expression data and associated metadata for an organism from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database. The data are compiled into text files that can be used for downstream bioinformatic applications.
我们介绍了COnTORT（综合转录组组织工具），这是一个可公开获取的程序，它从美国国立生物技术信息中心（NCBI）的基因表达综合数据库（GEO）中检索某一生物体的所有可用基因表达数据及相关元数据。这些数据被汇编成文本文件，可用于下游的生物信息学应用。
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