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温泉中微生物群落的荟萃分析:反复出现的分类群以及pH值和温度之外的复杂塑造因素

Meta-Analysis of Microbial Communities in Hot Springs: Recurrent Taxa and Complex Shaping Factors beyond pH and Temperature.

作者信息

Massello Francisco L, Chan Chia Sing, Chan Kok-Gan, Goh Kian Mau, Donati Edgardo, Urbieta María Sofía

机构信息

CINDEFI (CCT, La Plata-CONICET, UNLP), Facultad de Ciencias Exactas, Universidad Nacional de La Plata, La Plata, 1900 Buenos Aires, Argentina.

Faculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai 81310, Malaysia.

出版信息

Microorganisms. 2020 Jun 16;8(6):906. doi: 10.3390/microorganisms8060906.

Abstract

The study of microbial communities from extreme environments is a fascinating topic. With every study, biologists and ecologists reveal interesting facts and questions that dispel the old belief that these are inhospitable environments. In this work, we assess the microbial diversity of three hot springs from Neuquén, Argentina, using high-throughput amplicon sequencing. We predicted a distinct metabolic profile in the acidic and the circumneutral samples, with the first ones being dominated by chemolithotrophs and the second ones by chemoheterotrophs. Then, we collected data of the microbial communities of hot springs around the world in an effort to comprehend the roles of pH and temperature as shaping factors. Interestingly, there was a covariation between both parameters and the phylogenetic distance between communities; however, neither of them could explain much of the microbial profile in an ordination model. Moreover, there was no correlation between alpha diversity and these parameters. Therefore, the microbial communities' profile seemed to have complex shaping factors beyond pH and temperature. Lastly, we looked for taxa associated with different environmental conditions. Several such taxa were found. For example, was frequently present in acidic springs, as was the Sulfolobaceae family; on the other hand, Hydrothermae phylum was strongly associated with circumneutral conditions. Interestingly, some singularities related to sites featuring certain taxa were also observed.

摘要

对极端环境中微生物群落的研究是一个引人入胜的课题。每一项研究都让生物学家和生态学家揭示出有趣的事实和问题,打破了这些是不适宜居住环境的旧观念。在这项工作中,我们使用高通量扩增子测序评估了阿根廷内乌肯三个温泉的微生物多样性。我们预测酸性和近中性样本具有不同的代谢特征,前者以化能自养生物为主,后者以化能异养生物为主。然后,我们收集了世界各地温泉微生物群落的数据,试图理解pH值和温度作为塑造因素的作用。有趣的是,这两个参数与群落之间的系统发育距离存在协变;然而,在排序模型中,它们都不能很好地解释微生物特征。此外,α多样性与这些参数之间没有相关性。因此,微生物群落的特征似乎有超越pH值和温度的复杂塑造因素。最后,我们寻找与不同环境条件相关的分类群。发现了几个这样的分类群。例如, 经常出现在酸性温泉中,硫化叶菌科也是如此;另一方面,水热菌门与近中性条件密切相关。有趣的是,还观察到了与具有某些分类群的地点相关的一些独特之处。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dba3/7356817/102b2718d54d/microorganisms-08-00906-g001.jpg

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