Carrillo-Larco Rodrigo M, Castillo-Cara Manuel
Department of Epidemiology and Biostatistics, School of Public Health, Imperial College London, London, UK.
CRONICAS Centre of Excellence in Chronic Diseases, Universidad Peruana Cayetano Heredia, Lima, Peru.
Wellcome Open Res. 2020 Jun 15;5:56. doi: 10.12688/wellcomeopenres.15819.3. eCollection 2020.
The COVID-19 pandemic has attracted the attention of researchers and clinicians whom have provided evidence about risk factors and clinical outcomes. Research on the COVID-19 pandemic benefiting from open-access data and machine learning algorithms is still scarce yet can produce relevant and pragmatic information. With country-level pre-COVID-19-pandemic variables, we aimed to cluster countries in groups with shared profiles of the COVID-19 pandemic. Unsupervised machine learning algorithms (k-means) were used to define data-driven clusters of countries; the algorithm was informed by disease prevalence estimates, metrics of air pollution, socio-economic status and health system coverage. Using the one-way ANOVA test, we compared the clusters in terms of number of confirmed COVID-19 cases, number of deaths, case fatality rate and order in which the country reported the first case. The model to define the clusters was developed with 155 countries. The model with three principal component analysis parameters and five or six clusters showed the best ability to group countries in relevant sets. There was strong evidence that the model with five or six clusters could stratify countries according to the number of confirmed COVID-19 cases (p<0.001). However, the model could not stratify countries in terms of number of deaths or case fatality rate. : A simple data-driven approach using available global information before the COVID-19 pandemic, seemed able to classify countries in terms of the number of confirmed COVID-19 cases. The model was not able to stratify countries based on COVID-19 mortality data.
新冠疫情吸引了研究人员和临床医生的关注,他们提供了有关风险因素和临床结果的证据。利用开放获取数据和机器学习算法对新冠疫情进行的研究仍然很少,但可以产生相关且实用的信息。基于新冠疫情之前的国家层面变量,我们旨在将各国聚类为具有共同新冠疫情特征的组。使用无监督机器学习算法(k均值)来定义由数据驱动的国家聚类;该算法依据疾病患病率估计、空气污染指标、社会经济状况和卫生系统覆盖范围来确定。我们使用单因素方差分析测试,在确诊的新冠病例数、死亡数、病死率以及该国报告首例病例的顺序方面对这些聚类进行比较。定义聚类的模型是根据155个国家开发的。具有三个主成分分析参数和五个或六个聚类的模型显示出将各国分组到相关集合中的最佳能力。有强有力的证据表明,具有五个或六个聚类的模型可以根据确诊的新冠病例数对各国进行分层(p<0.001)。然而,该模型无法根据死亡数或病死率对各国进行分层。:一种使用新冠疫情之前可用的全球信息的简单数据驱动方法,似乎能够根据确诊的新冠病例数对各国进行分类。该模型无法根据新冠死亡率数据对各国进行分层。