Department of Thoracic and Cardiovascular Diseases, First Affiliated Hospital of Guangxi Medical University, Nanning, China.
Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, China.
FEBS Open Bio. 2020 Aug;10(8):1624-1641. doi: 10.1002/2211-5463.12920. Epub 2020 Jul 14.
Lung squamous cell carcinoma (LUSC) is the main pathological type of pulmonary malignant tumors; at present, less than 10% of patients with advanced metastatic LUSC live for more than 5 years. We previously reported that low expression of miRNA-126-3p is associated with the occurrence and progression of lung adenocarcinoma (LUAD). Here, we examined expression of miRNA-126-3p in 23 samples from patients with LUSCs and 23 normal control specimens by quantitative real-time PCR (RT-qPCR). Associations between miRNA-126-3p expression and clinical features were studied from materials derived from Gene Expression Omnibus (GEO) chips and The Cancer Genome Atlas (TCGA) database. Twelve online platforms were used to identify candidate target genes of miRNA-126-3p. Further analyses of the Kyoto Encyclopedia of Genes and Genomes (KEGG), Gene Ontology (GO), and protein-protein interaction (PPI) network were performed on the target genes. GEO microarray analysis, TCGA data mining, RT-qPCR, and integration analysis consistently reported low expression of miRNA-126-3p in LUSC. A total of 42 genes were identified as potential target genes of miRNA-126-3p from online platforms, GEO microarrays, and the TCGA database. GO and KEGG analyses demonstrated that the target genes are involved in several biological processes that promote the progression of LUSC. SOX2, E2F2, and E2F3 were selected as hub genes from the PPI network for further analysis. In summary, our results suggest that the low expression of miRNA-126-3p may play a role in promoting the development of LUSC and miRNA-126-3p may be a biomarker for LUSC early diagnosis and prognosis.
肺鳞状细胞癌(LUSC)是肺部恶性肿瘤的主要病理类型;目前,不到 10%的晚期转移性 LUSC 患者的生存期超过 5 年。我们之前报道过,miRNA-126-3p 的低表达与肺腺癌(LUAD)的发生和进展有关。在这里,我们通过定量实时 PCR(RT-qPCR)检测了 23 例 LUSC 患者和 23 例正常对照样本中 miRNA-126-3p 的表达。通过基因表达综合数据库(GEO)芯片和癌症基因组图谱(TCGA)数据库中的材料研究了 miRNA-126-3p 表达与临床特征之间的关系。使用 12 个在线平台来鉴定 miRNA-126-3p 的候选靶基因。对靶基因进行京都基因与基因组百科全书(KEGG)、基因本体论(GO)和蛋白质-蛋白质相互作用(PPI)网络的进一步分析。GEO 微阵列分析、TCGA 数据分析、RT-qPCR 和整合分析一致报告 LUSC 中 miRNA-126-3p 的低表达。从在线平台、GEO 微阵列和 TCGA 数据库中鉴定出 42 个可能是 miRNA-126-3p 的靶基因。GO 和 KEGG 分析表明,这些靶基因参与了促进 LUSC 进展的几个生物学过程。从 PPI 网络中选择 SOX2、E2F2 和 E2F3 作为进一步分析的枢纽基因。总之,我们的结果表明,miRNA-126-3p 的低表达可能在促进 LUSC 的发展中发挥作用,miRNA-126-3p 可能是 LUSC 早期诊断和预后的生物标志物。